Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007261.1

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

10382 .. 13564

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007261.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggggatagctgatgtgattttggaccttgtgagtactgggaggacactaaaagaaaacaagggaggaattgtgttgagaagtcaggcagttcttgttgctagcaagagatcctttctccgaaggaaaaattcactagacgcgacacgtgagattctcgaaaggttggatgcaaatcgaaaggcagaggccttcaaatcccaggaaccaccgccgcccaccttgaagttttcacctctaagagcccagaactggcagcgctgcccccagaatcggcaggaaaatacccgaaccggccccctggaaataccgaaaacctttatgtcggatacgaagccttcctctctgcctactgctaccatactccaccagaagctacaatctgaccccagatcaccggagccgaaaaatcgccacaggaaccggcctagaacccgaaccggccgtctgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

151

Amino Acids

17.18

Weight (kDa)

11.36

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	212, 215
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	130
AcvI	CACGTG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	252, 273
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	196, 226
AjnI	CCWGG	2 cut(s)	201, 300
AluBI	AGCT	2 cut(s)	11, 376
AluI	AGCT	2 cut(s)	11, 376
AlwI	GGATC	1 cut(s)	105
Aor51HI	AGCGCT	1 cut(s)	260
AoxI	GGCC	4 cut(s)	189, 295, 425, 442
ApeKI	GCWGC	2 cut(s)	256, 261
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	25, 296
AsuHPI	GGTGA	2 cut(s)	225, 387
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	247
BbrPI	CACGTG	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	248, 268
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	2 cut(s)	203, 302
BciVI	GTATCC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	102, 137, 429
BfoI	RGCGCY	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	215, 257, 262
BlsI	GCNGC	3 cut(s)	216, 258, 263
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	203, 302
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 296
BmiI	GGNNCC	4 cut(s)	207, 298, 402, 422
BmrFI	CCNGG	2 cut(s)	203, 302
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	160
BmtI	GCTAGC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	201, 300
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 273
Bse118I	RCCGGY	3 cut(s)	293, 423, 440
Bse1I	ACTGG	2 cut(s)	43, 257
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	203, 302
BseDI	CCNNGG	2 cut(s)	201, 300
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	252, 273
BseNI	ACTGG	2 cut(s)	43, 257
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	248, 268
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	4 cut(s)	191, 297, 427, 444
BsiEI	CGRYCG	1 cut(s)	445
BsiSI	CCGG	4 cut(s)	294, 398, 424, 441
BslI	CCNNNNNNNGG	2 cut(s)	252, 273
BsnI	GGCC	4 cut(s)	191, 297, 427, 444
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	110, 392
BspACI	CCGC	2 cut(s)	212, 215
BspANI	GGCC	4 cut(s)	191, 297, 427, 444
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	207, 298, 402, 422
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	105
BsrFI	RCCGGY	3 cut(s)	293, 423, 440
BsrI	ACTGG	2 cut(s)	43, 257
BssAI	RCCGGY	3 cut(s)	293, 423, 440
BssECI	CCNNGG	2 cut(s)	201, 300
BssMI	GATC	2 cut(s)	110, 392
Bst2UI	CCWGG	2 cut(s)	203, 302
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	113, 395
BstMBI	GATC	2 cut(s)	110, 392
BstMCI	CGRYCG	1 cut(s)	445
BstNI	CCWGG	2 cut(s)	203, 302
BstSCI	CCNGG	2 cut(s)	201, 300
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	248, 268
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	191, 297, 427, 444
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	3 cut(s)	293, 423, 440
Cfr13I	GGNCC	2 cut(s)	25, 296
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	9 cut(s)	11, 191, 245, 297, 337, 376, 403, 427, 444
CviKI_1	RGCY	9 cut(s)	11, 191, 245, 297, 337, 376, 403, 427, 444
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	112, 394
DpnII	GATC	2 cut(s)	110, 392
EaeI	YGGCCR	1 cut(s)	442
EagI	CGGCCG	1 cut(s)	442
EclXI	CGGCCG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	442
Eco72I	CACGTG	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	201, 300
EcoT38I	GRGCYC	1 cut(s)	247
FaiI	YATR	2 cut(s)	323, 362
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
Fnu4HI	GCNGC	3 cut(s)	215, 257, 262
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	215, 257, 262
FspBI	CTAG	3 cut(s)	102, 137, 429
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	3 cut(s)	215, 257, 262
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	191, 297, 427, 444
HapII	CCGG	4 cut(s)	294, 398, 424, 441
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	261
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	154, 271
HpaII	CCGG	4 cut(s)	294, 398, 424, 441
HphI	GGTGA	2 cut(s)	225, 387
Hpy188I	TCNGA	4 cut(s)	122, 328, 385, 450
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	117, 202, 348
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	148
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	110, 392
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	248, 268
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	102, 137, 429
MaeII	ACGT	1 cut(s)	148
MalI	GATC	2 cut(s)	112, 394
MboI	GATC	2 cut(s)	110, 392
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	69, 130
MmeI	TCCRAC	2 cut(s)	147, 306
MnlI	CCTC	5 cut(s)	36, 59, 181, 246, 352
MspI	CCGG	4 cut(s)	294, 398, 424, 441
MspR9I	CCNGG	2 cut(s)	203, 302
MvaI	CCWGG	2 cut(s)	203, 302
MvnI	CGCG	1 cut(s)	143
NdeII	GATC	2 cut(s)	110, 392
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	207, 298, 402, 422
PceI	AGGCCT	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	154, 271
PkrI	GCNGC	3 cut(s)	216, 258, 263
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	201, 300
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	201, 300
PspN4I	GGNNCC	4 cut(s)	207, 298, 402, 422
PspPI	GGNCC	2 cut(s)	25, 296
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	215, 257, 262
Sau3AI	GATC	2 cut(s)	110, 392
Sau96I	GGNCC	2 cut(s)	25, 296
ScaI	AGTACT	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	203, 302
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	8 cut(s)	13, 30, 151, 167, 224, 238, 320, 378
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	69, 130
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	2 cut(s)	212, 215
SspMI	CTAG	3 cut(s)	102, 137, 429
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	201, 300
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	159, 178
TasI	AATT	2 cut(s)	69, 130
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	154, 271
TseI	GCWGC	2 cut(s)	256, 261
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	3 cut(s)	102, 137, 429
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.