Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00261

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Reverse (-)

31149 .. 34616

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTGGCGGCAAACCCACCCAAATGCCCCTTCTTCCTCACTCACTCCCTCCCCCTCTCCTCCTCTCCCTCGCCGTCCTTCAAAATCACCTGCTCTGCTGCGGCGGAGGAGAGGAGCGAGATTCGGCTGGGACTGCCCAGCAAAGGCCGCATGGCCGCCGACACTCTCGATCTCCTCAAGGACTGCCAATTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATCCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGTGAATATGGACAGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGTTTTGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAATTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGAGTTTTTCCACAGCTGATGGAGCACTTGAGGCAGCTCCTGCGATGGGGATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATCTGAAAGAGATCGAGGGAGGAGTTGTGTTGCAAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCGCATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATGTGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTGTAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTATGCCATCGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAATTGAGAGCGATTGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

374

Amino Acids

40.76

Weight (kDa)

6.41

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	90 - 266	3.8e-37	ATP phosphoribosyltransferase
HisG_C	PF08029	271 - 355	1.7e-11	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	5 cut(s)	8, 101, 104, 148, 156
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	3 cut(s)	221, 925, 1014
AfiI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
AgsI	TTSAA	3 cut(s)	82, 266, 767
AjiI	CACGTC	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	6 cut(s)	241, 466, 584, 605, 623, 899
AluI	AGCT	6 cut(s)	241, 466, 584, 605, 623, 899
Alw21I	GWGCWC	3 cut(s)	595, 763, 859
Alw44I	GTGCAC	2 cut(s)	759, 855
AlwI	GGATC	1 cut(s)	732
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	5 cut(s)	145, 153, 269, 996, 1117
ApaLI	GTGCAC	2 cut(s)	759, 855
ApeKI	GCWGC	2 cut(s)	98, 602
ApoI	RAATTY	1 cut(s)	539
AseI	ATTAAT	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	6 cut(s)	310, 533, 562, 637, 911, 997
AsuHPI	GGTGA	2 cut(s)	79, 514
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	5 cut(s)	310, 533, 562, 637, 911
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	763, 859
Bbv12I	GWGCWC	3 cut(s)	595, 763, 859
BbvI	GCAGC	2 cut(s)	85, 614
BccI	CCATC	6 cut(s)	581, 607, 898, 938, 980, 1086
BceAI	ACGGC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	467, 489
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	6 cut(s)	10, 100, 103, 149, 157, 604
Bme18I	GGWCC	5 cut(s)	310, 533, 562, 637, 911
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	6 cut(s)	310, 533, 562, 637, 911, 997
BmiI	GGNNCC	4 cut(s)	534, 535, 912, 913
BmsI	GCATC	3 cut(s)	373, 616, 811
BmtI	GCTAGC	1 cut(s)	470
Bpu10I	CCTNAGC	2 cut(s)	237, 881
Bpu1102I	GCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	2 cut(s)	161, 617
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 431, 614
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	217, 520, 564
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	228, 861
BseNI	ACTGG	3 cut(s)	217, 520, 564
BseRI	GAGGAG	6 cut(s)	49, 52, 122, 127, 164, 708
BseSI	GKGCMC	2 cut(s)	763, 859
BseXI	GCAGC	2 cut(s)	85, 614
BseYI	CCCAGC	2 cut(s)	127, 137
BshFI	GGCC	5 cut(s)	147, 155, 271, 998, 1119
BsiHKAI	GWGCWC	3 cut(s)	595, 763, 859
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	3 cut(s)	144, 519, 924
BslI	CCNNNNNNNGG	3 cut(s)	143, 431, 614
BsmFI	GGGAC	3 cut(s)	144, 519, 924
BsnI	GGCC	5 cut(s)	147, 155, 271, 998, 1119
Bsp1286I	GDGCHC	3 cut(s)	595, 763, 859
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	4 cut(s)	169, 364, 684, 737
Bsp1720I	GCTNAGC	1 cut(s)	870
BspACI	CCGC	5 cut(s)	8, 101, 104, 148, 156
BspANI	GGCC	5 cut(s)	147, 155, 271, 998, 1119
BspCNI	CTCAG	2 cut(s)	229, 862
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	4 cut(s)	534, 535, 912, 913
BspMI	ACCTGC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	217, 520, 564
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	4 cut(s)	169, 364, 684, 737
BssNAI	GTATAC	1 cut(s)	825
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	825
Bst4CI	ACNGT	4 cut(s)	337, 829, 919, 928
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	1012
BstC8I	GCNNGC	3 cut(s)	468, 730, 887
BstDEI	CTNAG	4 cut(s)	237, 273, 870, 881
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	4 cut(s)	172, 367, 687, 740
BstMBI	GATC	4 cut(s)	169, 364, 684, 737
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
BstSLI	GKGCMC	2 cut(s)	763, 859
BstV1I	GCAGC	2 cut(s)	85, 614
BstX2I	RGATCY	2 cut(s)	364, 737
BstYI	RGATCY	2 cut(s)	364, 737
BstZ17I	GTATAC	1 cut(s)	825
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	5 cut(s)	147, 155, 271, 998, 1119
BtgZI	GCGATG	1 cut(s)	626
BtrI	CACGTC	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	6 cut(s)	346, 455, 659, 915, 933, 1045
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	468, 730, 887
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	6 cut(s)	310, 533, 562, 637, 911, 997
Csp6I	GTAC	3 cut(s)	220, 924, 1013
CviAII	CATG	4 cut(s)	151, 380, 566, 776
CviQI	GTAC	3 cut(s)	220, 924, 1013
DdeI	CTNAG	4 cut(s)	237, 273, 870, 881
DpnI	GATC	4 cut(s)	171, 366, 686, 739
DpnII	GATC	4 cut(s)	169, 364, 684, 737
EaeI	YGGCCR	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	271
Eco47I	GGWCC	5 cut(s)	310, 533, 562, 637, 911
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	3 cut(s)	533, 911, 997
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	154, 383, 569, 779
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 725, 757
FaqI	GGGAC	3 cut(s)	144, 519, 924
FatI	CATG	4 cut(s)	150, 379, 565, 775
FauNDI	CATATG	1 cut(s)	980
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
Fsp4HI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
FspBI	CTAG	2 cut(s)	467, 489
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
GsaI	CCCAGC	2 cut(s)	131, 141
HaeIII	GGCC	5 cut(s)	147, 155, 271, 998, 1119
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	4 cut(s)	154, 383, 569, 779
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HinfI	GANTC	3 cut(s)	121, 781, 876
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	79, 514
Hpy166II	GTNNAC	4 cut(s)	761, 825, 857, 1100
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	4 cut(s)	167, 329, 380, 785
Hpy8I	GTNNAC	4 cut(s)	761, 825, 857, 1100
HpyAV	CCTTC	2 cut(s)	40, 88
HpyCH4III	ACNGT	4 cut(s)	337, 829, 919, 928
HpyCH4IV	ACGT	3 cut(s)	204, 222, 940
HpyCH4V	TGCA	9 cut(s)	419, 629, 706, 728, 761, 836, 857, 907, 936
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
HpyF3I	CTNAG	4 cut(s)	237, 273, 870, 881
HpySE526I	ACGT	3 cut(s)	204, 222, 940
Hsp92II	CATG	4 cut(s)	154, 383, 569, 779
HspAI	GCGC	1 cut(s)	800
KflI	GGGWCCC	2 cut(s)	533, 911
Kzo9I	GATC	4 cut(s)	169, 364, 684, 737
LmnI	GCTCC	3 cut(s)	114, 590, 610
Lsp1109I	GCAGC	2 cut(s)	85, 614
LweI	GCATC	3 cut(s)	373, 616, 811
MaeI	CTAG	2 cut(s)	467, 489
MaeII	ACGT	3 cut(s)	204, 222, 940
MalI	GATC	4 cut(s)	171, 366, 686, 739
MboI	GATC	4 cut(s)	169, 364, 684, 737
MboII	GAAGA	3 cut(s)	25, 374, 1091
MfeI	CAATTG	2 cut(s)	188, 1019
MflI	RGATCY	2 cut(s)	364, 737
MhlI	GDGCHC	3 cut(s)	595, 763, 859
MluCI	AATT	6 cut(s)	188, 247, 451, 539, 630, 1019
MlyI	GAGTC	1 cut(s)	885
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	22, 983
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	324
MunI	CAATTG	2 cut(s)	188, 1019
MwoI	GCNNNNNNNGC	5 cut(s)	133, 147, 590, 599, 608
NdeI	CATATG	1 cut(s)	980
NdeII	GATC	4 cut(s)	169, 364, 684, 737
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	154, 383, 569, 779
NlaIV	GGNNCC	4 cut(s)	534, 535, 912, 913
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	121, 781
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	10, 100, 103, 149, 157, 604
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	2 cut(s)	533, 911
PshBI	ATTAAT	1 cut(s)	450
Psp5II	RGGWCCY	2 cut(s)	533, 911
PspFI	CCCAGC	2 cut(s)	127, 137
PspN4I	GGNNCC	4 cut(s)	534, 535, 912, 913
PspPI	GGNCC	6 cut(s)	310, 533, 562, 637, 911, 997
PspPPI	RGGWCCY	2 cut(s)	533, 911
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	364, 737
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	221, 925, 1014
RsaNI	GTAC	3 cut(s)	220, 924, 1013
RseI	CAYNNNNRTG	2 cut(s)	22, 983
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	6 cut(s)	9, 99, 102, 148, 156, 603
Sau3AI	GATC	4 cut(s)	169, 364, 684, 737
Sau96I	GGNCC	6 cut(s)	310, 533, 562, 637, 911, 997
SchI	GAGTC	1 cut(s)	885
SduI	GDGCHC	3 cut(s)	595, 763, 859
SfaNI	GCATC	3 cut(s)	373, 616, 811
SinI	GGWCC	5 cut(s)	310, 533, 562, 637, 911
SmiMI	CAYNNNNRTG	2 cut(s)	22, 983
SmlI	CTYRAG	2 cut(s)	176, 596
SmoI	CTYRAG	2 cut(s)	176, 596
Sse9I	AATT	6 cut(s)	188, 247, 451, 539, 630, 1019
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	5 cut(s)	8, 101, 104, 148, 156
SspMI	CTAG	2 cut(s)	467, 489
StuI	AGGCCT	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	337, 829, 919, 928
TaiI	ACGT	3 cut(s)	207, 225, 943
TaqI	TCGA	2 cut(s)	168, 687
TasI	AATT	6 cut(s)	188, 247, 451, 539, 630, 1019
TatI	WGTACW	2 cut(s)	923, 1012
TauI	GCSGC	4 cut(s)	11, 104, 150, 158
TfiI	GAWTC	2 cut(s)	121, 781
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	6 cut(s)	346, 462, 666, 922, 933, 1045
TseI	GCWGC	2 cut(s)	98, 602
TspDTI	ATGAA	3 cut(s)	368, 767, 1092
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	6 cut(s)	346, 462, 666, 922, 933, 1045
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	431
VneI	GTGCAC	2 cut(s)	759, 855
VpaK11BI	GGWCC	5 cut(s)	310, 533, 562, 637, 911
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	824
XspI	CTAG	2 cut(s)	467, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.