Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

35966862 .. 35968171

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1226300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTGGTATATGAGTACATGCCAAACATAAGTTTGGACAACTTTTTATTTGATTCTACCAGAGCTCTACTAGATTGGAAGAGGCGTTTCAGTATAATTGAAGGAATAGCTCAAGGATTGCTTTACTTGCACAAATACTCGAGAATGAGAGTAATTCATAGAGATTTGAAACCTAGTAACATATTACTTGATGAAAATATGAACCCCAAAATATCAGATTTTGGTATGGCAAGGATTTTCACCTATAATGAATTGGAAGCAAATACTGTTAGGATTGTTGGGACACGGGGGATATTTTCAATAAAATCTGATGTCTTCAGTTTTGGGGTGTTAATTCTCGAAATCATAAGTGGCAGGAAAAACAACAGCTTCTACAATGATGAGCGTGTGCTAAATTTAGTAGGATATACATGGGAGCTATGGAAAGAAGGCGCAGGGATAGAACTAATGGATCCAACACTAACGGATTCATGTGTTCGGGGATCAATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.96

Weight (kDa)

6.13

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 134	5.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 120	5.2e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	446, 459, 490
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	101, 169, 300
AluBI	AGCT	4 cut(s)	65, 110, 369, 418
AluI	AGCT	4 cut(s)	65, 110, 369, 418
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	446, 459, 490
Ama87I	CYCGRG	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	71, 174
BmeT110I	CYCGRG	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	451, 482
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	446, 459, 490
BssMI	GATC	2 cut(s)	451, 482
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	2 cut(s)	454, 485
BstMBI	GATC	2 cut(s)	451, 482
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
CfoI	GCGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	3 cut(s)	19, 411, 471
CviJI	RGCY	4 cut(s)	65, 110, 369, 418
CviKI_1	RGCY	4 cut(s)	65, 110, 369, 418
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	453, 484
DpnII	GATC	2 cut(s)	451, 482
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	3 cut(s)	22, 414, 474
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	18, 410, 470
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	71, 174
GlaI	GCGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	3 cut(s)	22, 414, 474
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	53, 467
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	217, 310
Hpy188III	TCNNGA	2 cut(s)	141, 338
HpyAV	CCTTC	2 cut(s)	95, 422
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	22, 414, 474
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	451, 482
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	3 cut(s)	73, 340, 420
MaeI	CTAG	2 cut(s)	71, 174
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	453, 484
MboI	GATC	2 cut(s)	451, 482
MboII	GAAGA	2 cut(s)	91, 307
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	6 cut(s)	96, 153, 251, 333, 394, 486
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	451, 482
NlaIII	CATG	3 cut(s)	22, 414, 474
NlaIV	GGNNCC	1 cut(s)	453
NspI	RCATGY	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	53, 467
Psp124BI	GAGCTC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	332
Sau3AI	GATC	2 cut(s)	451, 482
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	67, 112, 175, 245, 371, 420
Sfr274I	CTCGAG	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	111, 139
SmoI	CTYRAG	2 cut(s)	111, 139
Sse9I	AATT	6 cut(s)	96, 153, 251, 333, 394, 486
SspMI	CTAG	2 cut(s)	71, 174
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	140, 339
TasI	AATT	6 cut(s)	96, 153, 251, 333, 394, 486
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	53, 467
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TspDTI	ATGAA	5 cut(s)	146, 207, 215, 264, 459
TspGWI	ACGGA	1 cut(s)	479
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	139
XspI	CTAG	2 cut(s)	71, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.