Rmu_co8025508.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8025508.1
OG0001337
Physical Location & Seq
Forward (+)
1 .. 526
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8025508.1_g000001.1.cds

Sequence Viewer

Length: 201 bp
ctattcatgctaaagagatctactctttcagaagcccgaagaaagctggattccagaaagggggaataccgtggagaagaccaggaagacttggagttaccattatttgacttgaccactattgctaatgccactgatgacttttcaagcagcaacaagctgggtgaaggtggttttgggcctgtgtacaaggtaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

66

Amino Acids

7.47

Weight (kDa)

5.33

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 2 cut(s) 46, 160
AluI AGCT 2 cut(s) 46, 160
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 84, 93
BbvI GCAGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 83
BglII AGATCT 1 cut(s) 17
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 83
BpiI GAAGAC 2 cut(s) 84, 93
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 70
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 2 cut(s) 84, 93
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 7
CviJI RGCY 4 cut(s) 35, 46, 160, 181
CviKI_1 RGCY 4 cut(s) 35, 46, 160, 181
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 181
Hin1II CATG 1 cut(s) 10
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 32, 67, 68, 95, 146, 195
Lsp1109I GCAGC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 96
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 51, 89, 98
MflI RGATCY 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 83
SetI ASST 5 cut(s) 48, 162, 172, 195, 200
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 71
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 150
TspRI CASTG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.