Rh5DG185400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
20578031 .. 20578511
481 bp
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UTR
Exon/CDS
Intron
Rh5DG185400.1

Sequence Viewer

Length: 333 bp
ATGTTTGGAAGAAGGATGGTAAGTTGTTTGTATTCTTCTGACCCCTCCATTCTCCTCGTACTTCAGTTTTGTAGTGAGTTATTTAAATTTGATTGTATAAATGAAAAAGGAGCAGTACCATTTTTAGTATATAAGTTTATTGAAAGAAGTAACAAATCATGCTTCCTTTACTTAATTTCAGCAGGAAAACTGAGCCGCTGCCACAAGGAAAATCTGGAATTACCATTGTTTGACTTGGCTACCGTTGTTAATGCAACCTGTAACTTCTCAGACGACAATAAACTAGGAGAAGGTGACTCTGGATCTGTCTTTAAGGGTATATTGAAAGAATGA

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

6.56

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 60, 117
AgsI TTSAA 2 cut(s) 143, 325
AlwI GGATC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 305
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 10
BfaI CTAG 1 cut(s) 284
BisI GCNGC 2 cut(s) 196, 199
BlsI GCNGC 2 cut(s) 197, 200
BseGI GGATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 182, 282
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 183, 281
BspPI GGATC 1 cut(s) 310
BssMI GATC 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 191, 268
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 1 cut(s) 305
BstMBI GATC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 1 cut(s) 21
Csp6I GTAC 2 cut(s) 59, 116
CviAII CATG 1 cut(s) 159
CviJI RGCY 2 cut(s) 195, 239
CviKI_1 RGCY 2 cut(s) 195, 239
CviQI GTAC 2 cut(s) 59, 116
DdeI CTNAG 2 cut(s) 191, 268
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DraI TTTAAA 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 1 cut(s) 162
FaiI YATR 5 cut(s) 98, 130, 132, 160, 320
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 196, 199
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 196, 199
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 196, 199
Hin1II CATG 1 cut(s) 162
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 40, 271
Hpy188III TCNNGA 2 cut(s) 215, 300
HpyAV CCTTC 2 cut(s) 6, 284
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 191, 268
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 168, 200, 271, 285
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 149, 260, 293
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 2 cut(s) 21, 27
MflI RGATCY 1 cut(s) 302
MluCI AATT 3 cut(s) 86, 174, 218
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 2 cut(s) 55, 65
MseI TTAA 4 cut(s) 84, 173, 249, 312
MspA1I CMGCKG 1 cut(s) 198
NdeII GATC 1 cut(s) 302
NlaIII CATG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 197, 200
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 2 cut(s) 60, 117
RsaNI GTAC 2 cut(s) 59, 116
SaqAI TTAA 4 cut(s) 84, 173, 249, 312
SatI GCNGC 2 cut(s) 196, 199
Sau3AI GATC 1 cut(s) 302
SchI GAGTC 1 cut(s) 290
SetI ASST 2 cut(s) 260, 295
SgeI CNNG 9 cut(s) 68, 171, 195, 217, 227, 247, 270, 296, 312
SmiI ATTTAAAT 1 cut(s) 85
Sse9I AATT 3 cut(s) 86, 174, 218
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 284
SwaI ATTTAAAT 1 cut(s) 85
TaaI ACNGT 1 cut(s) 244
TasI AATT 3 cut(s) 86, 174, 218
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 4 cut(s) 84, 173, 249, 312
Tru9I TTAA 4 cut(s) 84, 173, 249, 312
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.