RchiOBHm_Chr1g0314521

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001337
Physical Location & Seq
Forward (+)
1818871 .. 1819092
222 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54513

Sequence Viewer

Length: 222 bp
ATGATGGAAGATGGACAAGAAATAACAGTGAAAAGGCTCGCAAGAGACTCTATGCAAGGAATTAATGAGTTCAAAAATGAGGTTGTACATATTGCCAAACTTCAGCACAGGAATCTAGCGAAGCTTCTAAGGTGCTGCTTTTTCAATAAGATAAATGATGCTGATCTACAAATGCATTCCCAACAAAAGGTTGGACTTCTTTATTTTTGGTTTGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

73

Amino Acids

8.69

Weight (kDa)

7.85

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 73, 145
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 135
AseI ATTAAT 1 cut(s) 63
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 5
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmsI GCATC 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 163, 214
BsrGI TGTACA 1 cut(s) 85
BssMI GATC 2 cut(s) 163, 214
Bst4CI ACNGT 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 166, 217
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 163, 214
BstV1I GCAGC 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 33, 217
Cac8I GCNNGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 86
CviJI RGCY 2 cut(s) 37, 124
CviKI_1 RGCY 2 cut(s) 37, 124
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 165, 216
DpnII GATC 2 cut(s) 163, 214
Eco57I CTGAAG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 177
FaiI YATR 2 cut(s) 53, 90
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 47, 112
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 55, 175
HpyF3I CTNAG 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 163, 214
LpnPI CCDG 1 cut(s) 94
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 116
MalI GATC 2 cut(s) 165, 216
MboI GATC 2 cut(s) 163, 214
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 73
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 175
NdeII GATC 2 cut(s) 163, 214
NsiI ATGCAT 1 cut(s) 177
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 63
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 163, 214
SchI GAGTC 1 cut(s) 41
SetI ASST 4 cut(s) 84, 126, 134, 192
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 6 cut(s) 29, 50, 54, 68, 121, 128
Sse9I AATT 1 cut(s) 60
SspMI CTAG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 135
TspRI CASTG 1 cut(s) 33
VspI ATTAAT 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.