Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

23695038 .. 23695380

Gene Structure 343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGGTTTTGCATCTTGGGCTATCGCCTGAGAAGAACAGGATTTATGGTTTTAGCAGGCAAGAAGGCGACAAAGATTCAAAGAAGATTGCTTGGCTTCATCAAAGCTACGAGACCTACAGATCAGGCAATTATACTGAACCCTGATTTACACGCATTTACCCATGAATCGGTCTTGGCTGCCACAGGCAACTTCTCTGAAGCAAACAAGCTCGGACAAGGGGGCTTTGGAACAGTTTATAAGGTAATATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

85

Amino Acids

9.24

Weight (kDa)

10.44

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	2 cut(s)	107, 211
AluI	AGCT	2 cut(s)	107, 211
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	106
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	58
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	6 cut(s)	21, 96, 107, 179, 211, 225
CviKI_1	RGCY	6 cut(s)	21, 96, 107, 179, 211, 225
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	219
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	47, 134, 165, 240
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	2 cut(s)	76, 167
Hpy188I	TCNGA	2 cut(s)	199, 215
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	24, 41, 42, 110, 156, 171
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	21
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	45, 96
MluCI	AATT	1 cut(s)	129
MseI	TTAA	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	76, 167
PkrI	GCNGC	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	121
SetI	ASST	4 cut(s)	109, 118, 213, 246
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	129
SspI	AATATT	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	235
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	76, 167
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	88, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.