Rorug04G0436200

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001337
Physical Location & Seq
Reverse (-)
59357673 .. 59359129
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0436200.1

Sequence Viewer

Length: 522 bp
ATGAGTTGGACTGGTGTAACTCCCCTTGTATCAGCAAATCCTCCAAAGCTTCACCAATCCTCTCCCTTCTATGCTTCTCCTTCTTCTTCTTCTTACTCTTCATTCCCAACTGTTAAGGTTTCATCAAGCTTGTCACAGAGATTTAGTGTTAGGTCCCTTTCCTTAAACAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTTCCGGACCCAATTCCAGATTTTGCTGATGCTGAGACTGAGAAGTTCAGGACCCATCTCCTGAATAAGCTATCCAAGAAAGAGGTGTATGACGACTCTGTTGAAGAGGTCGTAGGGATCTGCACTGAGATATTTGGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACGCTCTTGGTAGTTCCCTTCATTGATATGGCTGATACTCTAAACGAGCAGGGATTACCTGGAGGACCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGGGACATGTTGACAAGGACTGGAAGGAATGGACTGGTGATGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

173

Amino Acids

19.07

Weight (kDa)

5.33

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 465
AccII CGCG 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 326
AfaI GTAC 2 cut(s) 197, 340
AfiI CCNNNNNNNGG 1 cut(s) 465
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 2 cut(s) 367, 430
AluBI AGCT 4 cut(s) 49, 129, 271, 446
AluI AGCT 4 cut(s) 49, 129, 271, 446
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 326
Aor13HI TCCGGA 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 185, 188, 446, 455
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 5 cut(s) 153, 208, 252, 365, 437
AsuHPI GGTGA 2 cut(s) 44, 521
AvaII GGWCC 5 cut(s) 153, 208, 252, 365, 437
BaeGI GKGCMC 1 cut(s) 472
BbvI GCAGC 4 cut(s) 197, 200, 433, 442
BccI CCATC 2 cut(s) 264, 467
BciT130I CCWGG 2 cut(s) 369, 432
BcoDI GTCTC 1 cut(s) 230
BisI GCNGC 4 cut(s) 186, 189, 447, 456
BlsI GCNGC 4 cut(s) 187, 190, 448, 457
Bme1390I CCNGG 2 cut(s) 369, 432
Bme18I GGWCC 5 cut(s) 153, 208, 252, 365, 437
BmgT120I GGNCC 5 cut(s) 153, 208, 252, 365, 437
BmiI GGNNCC 3 cut(s) 155, 210, 254
BmrFI CCNGG 2 cut(s) 369, 432
BmsI GCATC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 16, 497, 511
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 2 cut(s) 369, 432
BseDI CCNNGG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 225, 231, 318
BseNI ACTGG 3 cut(s) 16, 497, 511
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 4 cut(s) 197, 200, 433, 442
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 451
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 3 cut(s) 139, 385, 489
BslI CCNNNNNNNGG 1 cut(s) 465
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 3 cut(s) 139, 385, 489
Bsp1286I GDGCHC 1 cut(s) 472
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 440
BspCNI CTCAG 3 cut(s) 226, 232, 319
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 155, 210, 254
BspPI GGATC 1 cut(s) 326
BsrI ACTGG 3 cut(s) 16, 497, 511
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 369, 432
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 103, 300
BstC8I GCNNGC 2 cut(s) 444, 453
BstDEI CTNAG 3 cut(s) 234, 240, 327
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 3 cut(s) 448, 452, 455
BstNI CCWGG 2 cut(s) 369, 432
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 367, 430
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 4 cut(s) 197, 200, 433, 442
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 444, 453
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 5 cut(s) 153, 208, 252, 365, 437
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 196, 339
CviAII CATG 1 cut(s) 479
CviJI RGCY 6 cut(s) 49, 129, 191, 271, 404, 446
CviKI_1 RGCY 6 cut(s) 49, 129, 191, 271, 404, 446
CviQI GTAC 2 cut(s) 196, 339
DdeI CTNAG 3 cut(s) 234, 240, 327
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 103, 300
EarI CTCTTC 2 cut(s) 103, 300
Eco47I GGWCC 5 cut(s) 153, 208, 252, 365, 437
EcoO109I RGGNCCY 2 cut(s) 153, 252
EcoRII CCWGG 2 cut(s) 367, 430
FaeI CATG 1 cut(s) 482
FaiI YATR 6 cut(s) 72, 178, 291, 360, 401, 480
FaqI GGGAC 3 cut(s) 139, 385, 489
FatI CATG 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 186, 189, 447, 456
Fsp4HI GCNGC 4 cut(s) 186, 189, 447, 456
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 186, 189, 447, 456
GsuI CTGGAG 1 cut(s) 453
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 482
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 2 cut(s) 47, 127
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 44, 521
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 4 cut(s) 206, 218, 250, 262
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 76, 90, 400, 490
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 3 cut(s) 180, 324, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 448, 452, 455
HpyF3I CTNAG 3 cut(s) 234, 240, 327
Hsp92II CATG 1 cut(s) 482
HspAI GCGC 1 cut(s) 449
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 318
Lsp1109I GCAGC 4 cut(s) 197, 200, 433, 442
LweI GCATC 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 16, 132
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 5 cut(s) 75, 78, 81, 90, 317
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 51, 70, 277, 301, 428
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 114, 164
MslI CAYNNNNRTG 1 cut(s) 398
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 369, 432
MvaI CCWGG 2 cut(s) 369, 432
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 448, 452, 455
NdeII GATC 1 cut(s) 318
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 3 cut(s) 155, 210, 254
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 482
PciI ACATGT 1 cut(s) 478
PflMI CCANNNNNTGG 1 cut(s) 465
PkrI GCNGC 4 cut(s) 187, 190, 448, 457
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 2 cut(s) 153, 252
PscI ACATGT 1 cut(s) 478
Psp5II RGGWCCY 2 cut(s) 153, 252
Psp6I CCWGG 2 cut(s) 367, 430
PspGI CCWGG 2 cut(s) 367, 430
PspN4I GGNNCC 3 cut(s) 155, 210, 254
PspPI GGNCC 5 cut(s) 153, 208, 252, 365, 437
PspPPI RGGWCCY 2 cut(s) 153, 252
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 2 cut(s) 197, 340
RsaNI GTAC 2 cut(s) 196, 339
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 114, 164
SatI GCNGC 4 cut(s) 186, 189, 447, 456
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 5 cut(s) 153, 208, 252, 365, 437
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 369, 432
SduI GDGCHC 1 cut(s) 472
SetI ASST 9 cut(s) 51, 120, 131, 155, 273, 288, 312, 433, 448
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 5 cut(s) 153, 208, 252, 365, 437
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 440
StyD4I CCNGG 2 cut(s) 367, 430
TaaI ACNGT 1 cut(s) 112
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 2 cut(s) 114, 164
Tru9I TTAA 2 cut(s) 114, 164
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 4 cut(s) 185, 188, 446, 455
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 90, 111, 382
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 5 cut(s) 153, 208, 252, 365, 437
XceI RCATGY 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.