Rmu_co8021090.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8021090.1
OG0001337
Physical Location & Seq
Forward (+)
1 .. 523
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8021090.1_g000001.1.cds

Sequence Viewer

Length: 302 bp
atcctattgtgaaaaagagcaagtctagcaagaaaaagctagctggaatcctgatcggctcatctgtacttgtgggaatgctaatagttgggtttgttttgtataaacggaagaggaaactcagaaagcaagaagcccgaagaaagctggattccagaaagggggattaccgtggagaagaccgggaagacatggagttaccattatttgacttgaccactattgctaatgccactaatgacttttcaagcagcaacaagctgggtgaaggtggttttgggcctgtgtacaaggtaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

10.25

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 68, 289
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 39, 43, 147, 261
AluI AGCT 4 cut(s) 39, 43, 147, 261
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 185, 194
BbvI GCAGC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 2 cut(s) 26, 40
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 184
BmtI GCTAGC 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 185, 194
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 161
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 134
BspOI GCTAGC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 171
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 2 cut(s) 185, 194
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 67, 288
CviAII CATG 1 cut(s) 192
CviJI RGCY 7 cut(s) 39, 43, 59, 136, 147, 261, 282
CviKI_1 RGCY 7 cut(s) 39, 43, 59, 136, 147, 261, 282
CviQI GTAC 2 cut(s) 67, 288
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
FaeI CATG 1 cut(s) 195
FaiI YATR 2 cut(s) 104, 193
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 26, 40
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 183
Hin1II CATG 1 cut(s) 195
HinfI GANTC 2 cut(s) 47, 151
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 51, 155
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 7 cut(s) 29, 64, 133, 168, 196, 247, 296
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 2 cut(s) 26, 40
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 4 cut(s) 123, 152, 190, 199
MnlI CCTC 1 cut(s) 107
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 184
NdeII GATC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 39
NlaIII CATG 1 cut(s) 195
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 47, 151
PkrI GCNGC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 280
RsaI GTAC 2 cut(s) 68, 289
RsaNI GTAC 2 cut(s) 67, 288
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 184
SetI ASST 7 cut(s) 41, 45, 149, 263, 273, 296, 301
SspMI CTAG 2 cut(s) 26, 40
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 172
TatI WGTACW 2 cut(s) 66, 287
TfiI GAWTC 2 cut(s) 47, 151
TseI GCWGC 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 123
XspI CTAG 2 cut(s) 26, 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.