Rmu_sc0000936.1_g000004

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000936.1
OG0001337
Physical Location & Seq
Reverse (-)
16639 .. 17867
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000936.1_g000004.1.cds

Sequence Viewer

Length: 258 bp
atggattactgtgaagaagaaagggaagacatggagttgccgctatttgacttcaccactattgctgatgccactgataacttttcaagcaacaataaactgggacaaggcggttttggacctgtgtacaagggcaagtttccaattgacatgcaccataccaggacgtctagagttcttagcatcctcctggcaacaatgtacgatggttcgtttcgcgctgccaagtatgttaagcatatgactaagaaaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

6.26

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 170
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 41, 111
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 128, 203
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 2 cut(s) 161, 189
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 163, 191
BfaI CTAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 41, 222
BlsI GCNGC 2 cut(s) 42, 223
Bme1390I CCNGG 2 cut(s) 163, 191
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 163, 191
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 58, 192
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 163, 191
BseGI GGATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 2 cut(s) 41, 111
BspFNI CGCG 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 163, 191
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 179, 246
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 163, 191
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 161, 189
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 72
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 127, 202
CviAII CATG 3 cut(s) 31, 151, 255
CviQI GTAC 2 cut(s) 127, 202
DdeI CTNAG 2 cut(s) 179, 246
Eco47I GGWCC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 161, 189
FaeI CATG 3 cut(s) 34, 154, 258
FaiI YATR 7 cut(s) 32, 152, 159, 231, 240, 242, 256
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 30, 150, 254
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 41, 222
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 41, 222
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 41, 222
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 3 cut(s) 34, 154, 258
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 179, 246
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 34, 154, 258
HspAI GCGC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 86, 135, 148, 175, 176, 203
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 58, 192
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 167
MboII GAAGA 3 cut(s) 26, 29, 38
MfeI CAATTG 1 cut(s) 144
MluCI AATT 1 cut(s) 144
MnlI CCTC 1 cut(s) 197
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 163, 191
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 2 cut(s) 163, 191
MvnI CGCG 1 cut(s) 219
NdeI CATATG 1 cut(s) 240
NlaIII CATG 3 cut(s) 34, 154, 258
NspI RCATGY 1 cut(s) 154
PkrI GCNGC 2 cut(s) 42, 223
Psp6I CCWGG 2 cut(s) 161, 189
PspGI CCWGG 2 cut(s) 161, 189
PspPI GGNCC 1 cut(s) 119
RsaI GTAC 2 cut(s) 128, 203
RsaNI GTAC 2 cut(s) 127, 202
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 41, 222
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 163, 191
SetI ASST 2 cut(s) 124, 170
SfaNI GCATC 2 cut(s) 58, 192
SinI GGWCC 1 cut(s) 119
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 41, 111
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 161, 189
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 170
TasI AATT 1 cut(s) 144
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 221
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 171
ZraI GACGTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.