RchiOBHm_Chr5g0025391

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19305286 .. 19306728
1443 bp
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UTR
Exon/CDS
Intron
PRQ30505

Sequence Viewer

Length: 873 bp
ATGAAATCTAATAAACCTGCTGATGCTAATGGGCTTCAAAATGATGGAAAGAGGGGACAACATTTAAGTGTATTTAGTTATGCATCTATTATAGCTGCCACTTGCAACTTCTCTAATGAAAATAAGCTCGGAGAAGGGGGTTTTGGACCTGTTTATAAGCATACAAACCTTGTTCAGCTGTTTGGATTTTGCATTCATGGTGAAGAGAGGATGTTGATATACGAGTACATGCCAAACAAAAGCTTGGACTACTTTTTATTTGATTCAACTAGATGCCAGCAATTAGACTGGAACAACCGTTTCAGCATAATTGAAGGAATTGCTCAAGGTTTACTTTACTTGCACAAATATTCCAGAATGAGAGTAAGTCATAGAGATTTGACAGCAAGTAATGTTTTACTTGATGATAGCATGAACCCCAAAATTTCTGATTTTGGAATGGCAAGGATTTTCACGAATGATGAACAAGAAGCAAATACTATGAAGATTGTTGCGACACGAAGAAACAACAGCTTCAACAATGATGATCGCGCCCTCAATTTAGTTGGTTATGCATGGGCGTTATGGAAAGAAGGTGTAGGACTAGAACTACTGGATCCAACACTTGGCGATTCATGTGATAAAGATCATTTGTTGAGGTGCATCTATGTTGGGTTGCTCTGCGTAGAGGAAAATGCAGCCAGTCGACCAAAGATGTTAAATCACTTAAATGTGATAGCTATGCTGGCTAATGAAAGCATGTCACTGCCAATACCTACAAAACCAACATTTTGTACAGAAAGAAATGTCATCACAACTACTGTAGGTGGAAACAGACTGGAAGTGGTGGTATCGGTAAATGGTATCTCCAATTCTGATTTTGATGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

290

Amino Acids

32.45

Weight (kDa)

5.82

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 52 - 159 1.6e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 52 - 166 8.6e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 605
AccI GTMKAC 1 cut(s) 685
AccII CGCG 1 cut(s) 531
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 1 cut(s) 423
AfaI GTAC 2 cut(s) 227, 775
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 4 cut(s) 38, 267, 314, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 6 cut(s) 95, 127, 178, 243, 513, 719
AluI AGCT 6 cut(s) 95, 127, 178, 243, 513, 719
AlwI GGATC 2 cut(s) 590, 603
ApeKI GCWGC 2 cut(s) 95, 677
ApoI RAATTY 1 cut(s) 423
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 146
BamHI GGATCC 1 cut(s) 595
BbvI GCAGC 2 cut(s) 82, 689
BccI CCATC 2 cut(s) 38, 857
BfaI CTAG 2 cut(s) 270, 584
BfmI CTRYAG 1 cut(s) 801
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 2 cut(s) 96, 678
BlsI GCNGC 2 cut(s) 97, 679
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 597
BmsI GCATC 4 cut(s) 13, 92, 263, 651
BpuEI CTTGAG 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 4 cut(s) 293, 597, 681, 822
Bse8I GATNNNNATC 1 cut(s) 624
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 1 cut(s) 605
BseNI ACTGG 4 cut(s) 293, 597, 681, 822
BseXI GCAGC 2 cut(s) 82, 689
Bsh1236I CGCG 1 cut(s) 531
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 773
Bsp143I GATC 3 cut(s) 526, 595, 625
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 597
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 590, 603
BsrGI TGTACA 1 cut(s) 773
BsrI ACTGG 4 cut(s) 293, 597, 681, 822
BssMI GATC 3 cut(s) 526, 595, 625
Bst4CI ACNGT 2 cut(s) 299, 802
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 278, 726
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 3 cut(s) 529, 598, 628
BstMBI GATC 3 cut(s) 526, 595, 625
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNSI RCATGY 2 cut(s) 232, 742
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 82, 689
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 743
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 278, 726
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 226, 774
CviAII CATG 6 cut(s) 197, 229, 412, 555, 615, 739
CviJI RGCY 9 cut(s) 34, 95, 127, 178, 243, 513, 680, 719, 728
CviKI_1 RGCY 9 cut(s) 34, 95, 127, 178, 243, 513, 680, 719, 728
CviQI GTAC 2 cut(s) 226, 774
DpnI GATC 3 cut(s) 528, 597, 627
DpnII GATC 3 cut(s) 526, 595, 625
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 146
EcoT22I ATGCAT 2 cut(s) 85, 556
FaeI CATG 6 cut(s) 200, 232, 415, 558, 618, 742
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 69
FatI CATG 6 cut(s) 196, 228, 411, 554, 614, 738
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 96, 678
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 96, 678
FspBI CTAG 2 cut(s) 270, 584
GlaI GCGC 1 cut(s) 532
GluI GCNGC 2 cut(s) 96, 678
HhaI GCGC 1 cut(s) 533
Hin1II CATG 6 cut(s) 200, 232, 415, 558, 618, 742
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 2 cut(s) 263, 611
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 332, 686
Hpy188I TCNGA 3 cut(s) 131, 430, 856
Hpy188III TCNNGA 2 cut(s) 354, 454
Hpy8I GTNNAC 2 cut(s) 332, 686
HpyAV CCTTC 3 cut(s) 128, 308, 566
HpyCH4III ACNGT 2 cut(s) 299, 802
HpyCH4V TGCA 7 cut(s) 83, 105, 192, 343, 554, 642, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
Hsp92II CATG 6 cut(s) 200, 232, 415, 558, 618, 742
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 3 cut(s) 526, 595, 625
LpnPI CCDG 9 cut(s) 30, 162, 274, 290, 367, 578, 694, 710, 803
Lsp1109I GCAGC 2 cut(s) 82, 689
LweI GCATC 4 cut(s) 13, 92, 263, 651
MaeI CTAG 2 cut(s) 270, 584
MaeIII GTNAC 1 cut(s) 741
MalI GATC 3 cut(s) 528, 597, 627
MboI GATC 3 cut(s) 526, 595, 625
MboII GAAGA 3 cut(s) 215, 496, 513
MflI RGATCY 1 cut(s) 595
MluCI AATT 6 cut(s) 281, 309, 318, 423, 538, 850
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 5 cut(s) 45, 201, 545, 630, 661
Mph1103I ATGCAT 2 cut(s) 85, 556
MseI TTAA 4 cut(s) 65, 698, 707, 871
MslI CAYNNNNRTG 2 cut(s) 66, 708
MspA1I CMGCKG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 192
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 3 cut(s) 526, 595, 625
NlaIII CATG 6 cut(s) 200, 232, 415, 558, 618, 742
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 741
NsiI ATGCAT 2 cut(s) 85, 556
NspI RCATGY 2 cut(s) 232, 742
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 263, 611
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 2 cut(s) 97, 679
PsiI TTATAA 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 2 cut(s) 227, 775
RsaNI GTAC 2 cut(s) 226, 774
RseI CAYNNNNRTG 2 cut(s) 66, 708
SalI GTCGAC 1 cut(s) 684
SaqAI TTAA 4 cut(s) 65, 698, 707, 871
SatI GCNGC 2 cut(s) 96, 678
Sau3AI GATC 3 cut(s) 526, 595, 625
Sau96I GGNCC 1 cut(s) 146
SfaNI GCATC 4 cut(s) 13, 92, 263, 651
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 66, 708
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 6 cut(s) 281, 309, 318, 423, 538, 850
SspI AATATT 1 cut(s) 350
SspMI CTAG 2 cut(s) 270, 584
TaaI ACNGT 2 cut(s) 299, 802
TaqI TCGA 1 cut(s) 685
TasI AATT 6 cut(s) 281, 309, 318, 423, 538, 850
TatI WGTACW 2 cut(s) 225, 773
TfiI GAWTC 2 cut(s) 263, 611
Tru1I TTAA 4 cut(s) 65, 698, 707, 871
Tru9I TTAA 4 cut(s) 65, 698, 707, 871
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 1 cut(s) 741
TseI GCWGC 2 cut(s) 95, 677
Tsp45I GTSAC 1 cut(s) 741
TspDTI ATGAA 8 cut(s) 17, 132, 185, 428, 477, 497, 603, 747
TspRI CASTG 1 cut(s) 750
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 423
XceI RCATGY 2 cut(s) 232, 742
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 2 cut(s) 270, 584
Zsp2I ATGCAT 2 cut(s) 85, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.