Rh7AG216200

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001337
Physical Location & Seq
Forward (+)
20114062 .. 20136293
22232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG216200.1

Sequence Viewer

Length: 231 bp
ATGGCGGAGGTTCTCCCGGCGAAAACTACTACGGCAGCGGTCCAGGTGGAGGCGGTAGCTGGGAGAATGGATTACTGTGAAGAAGAAAGGGAAGACATGGAGTTGCCGCTATTTGACTTCACCACTATTGCTGATGCCATTGATAACTTTTCAAGCAACAACAAACTGGGACAAGGCGGTTTTGGACCTGTGTACAAGGAATTTGAAAACAATGAACGGACAAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

76

Amino Acids

8.43

Weight (kDa)

4.16

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 38, 53, 107, 177
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 153, 206
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 40, 185
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 2 cut(s) 40, 185
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 17
BisI GCNGC 2 cut(s) 36, 107
BlsI GCNGC 2 cut(s) 37, 108
Bme1390I CCNGG 2 cut(s) 17, 44
Bme18I GGWCC 2 cut(s) 40, 185
BmgT120I GGNCC 2 cut(s) 40, 185
BmrFI CCNGG 2 cut(s) 17, 44
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 192
BspACI CCGC 5 cut(s) 5, 38, 53, 107, 177
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 192
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 15, 42
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 40, 185
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 97
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
CviQI GTAC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 40, 185
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 36, 107
Fsp4HI GCNGC 2 cut(s) 36, 107
GluI GCNGC 2 cut(s) 36, 107
GsaI CCCAGC 1 cut(s) 63
HapII CCGG 1 cut(s) 17
Hin1II CATG 1 cut(s) 100
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 77
Hsp92II CATG 1 cut(s) 100
LpnPI CCDG 6 cut(s) 29, 30, 45, 56, 152, 201
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 92, 95, 104
MluCI AATT 2 cut(s) 200, 226
MnlI CCTC 1 cut(s) 43
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 17, 44
MvaI CCWGG 1 cut(s) 44
NciI CCSGG 1 cut(s) 17
NlaIII CATG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 37, 108
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 2 cut(s) 40, 185
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 2 cut(s) 36, 107
Sau96I GGNCC 2 cut(s) 40, 185
ScrFI CCNGG 2 cut(s) 17, 44
SetI ASST 4 cut(s) 12, 48, 61, 190
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 2 cut(s) 40, 185
Sse9I AATT 2 cut(s) 200, 226
SsiI CCGC 5 cut(s) 5, 38, 53, 107, 177
StyD4I CCNGG 2 cut(s) 15, 42
TaaI ACNGT 1 cut(s) 77
TasI AATT 2 cut(s) 200, 226
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 109
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 40, 185
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.