Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

20216029 .. 20217168

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTGACGAAACTAACAAAATCATCACCCCATGAAAATTGTACAACTCATACATGGATTTGGATTGCCGCTGCTATTAGTGGTGCTGTTTTGGTAATGACATTTTGCATCTTTTGCTATCTACTAAGAAGAAGAAAACTTTCAGGTGAGAAGAGGATAACGGTCGATCACAACGAACTGCTTAATTTCATGAATTCTGATAGACCTGCTGGTGTGAATGGACTTCAAAATGATGGAAGGGTGGGTCATGATTTAAGCGTATTTAGTTATACATCTGTGCTGGAGGCCACATGCAACTTCTCTGAAGAAAACAAGCATGGAGAACGGGGATTTGGACCTGTTTATAAGGGAAAACTAGTGATGGGACAAGAAATAGCAGTGAAGAGGCTCTCAAAATGTTCCGGGCAAGGAACTTTAGAGTTTAAGAATGAATTGATCATCGTATATGAACTTCAACATACAAACCTTGTTCAGCTTTATGGATTTTGCATTTATGGTGAAGAGAGGATCTTGATATATGAGTACATGCCAAACAAGAGTTTAGACTACTTTTTATTTGGTAAACTAGTTGACAATTTGGTAATTGTTTATTTTGTTCTGCACGAAGAATCAAGGGTGGACCGCCATTTAGCTACTAACTATGTAGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.84

Weight (kDa)

7.07

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	102 - 185	9.4e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	105 - 186	2.3e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	214
AciI	CCGC	2 cut(s)	69, 622
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	43, 524
AgsI	TTSAA	3 cut(s)	227, 455, 650
AhlI	ACTAGT	2 cut(s)	355, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	2 cut(s)	475, 632
AluI	AGCT	2 cut(s)	475, 632
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	193
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	335, 619
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	18, 158, 509
AvaII	GGWCC	2 cut(s)	335, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	227, 355
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	403
BcuI	ACTAGT	2 cut(s)	355, 565
BfaI	CTAG	2 cut(s)	356, 566
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	335, 619
BmgT120I	GGNCC	2 cut(s)	335, 619
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	166, 435, 507
BspACI	CCGC	2 cut(s)	69, 622
BspANI	GGCC	1 cut(s)	287
BspHI	TCATGA	2 cut(s)	189, 247
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	41
BssMI	GATC	3 cut(s)	166, 435, 507
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	3 cut(s)	146, 377, 495
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	169, 438, 510
BstMBI	GATC	3 cut(s)	166, 435, 507
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	294, 529
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	214
CciI	TCATGA	2 cut(s)	189, 247
Cfr13I	GGNCC	2 cut(s)	335, 619
Csp6I	GTAC	2 cut(s)	42, 523
CviAII	CATG	7 cut(s)	32, 54, 190, 248, 291, 317, 526
CviJI	RGCY	4 cut(s)	287, 388, 475, 632
CviKI_1	RGCY	4 cut(s)	287, 388, 475, 632
CviQI	GTAC	2 cut(s)	42, 523
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	168, 437, 509
DpnII	GATC	3 cut(s)	166, 435, 507
Eam1104I	CTCTTC	3 cut(s)	146, 377, 495
EarI	CTCTTC	3 cut(s)	146, 377, 495
Eco47I	GGWCC	2 cut(s)	335, 619
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	193
FaeI	CATG	7 cut(s)	35, 57, 193, 251, 294, 320, 529
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	7 cut(s)	31, 53, 189, 247, 290, 316, 525
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	69, 72
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	2 cut(s)	356, 566
GluI	GCNGC	2 cut(s)	69, 72
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	7 cut(s)	35, 57, 193, 251, 294, 320, 529
HincII	GTYRAC	2 cut(s)	6, 571
HindII	GTYRAC	2 cut(s)	6, 571
HinfI	GANTC	1 cut(s)	608
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	18, 158, 509
Hpy166II	GTNNAC	4 cut(s)	6, 563, 571, 619
Hpy188I	TCNGA	2 cut(s)	199, 304
Hpy188III	TCNNGA	3 cut(s)	190, 248, 511
Hpy8I	GTNNAC	4 cut(s)	6, 563, 571, 619
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	108, 294, 489, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	35, 57, 193, 251, 294, 320, 529
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	166, 435, 507
LpnPI	CCDG	6 cut(s)	129, 195, 219, 266, 351, 415
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	356, 566
MalI	GATC	3 cut(s)	168, 437, 509
MboI	GATC	3 cut(s)	166, 435, 507
MboII	GAAGA	7 cut(s)	141, 144, 163, 317, 394, 512, 617
MflI	RGATCY	1 cut(s)	507
MluCI	AATT	6 cut(s)	37, 184, 193, 431, 574, 582
MnlI	CCTC	4 cut(s)	147, 277, 378, 498
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	3 cut(s)	183, 254, 423
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	3 cut(s)	166, 435, 507
NlaIII	CATG	7 cut(s)	35, 57, 193, 251, 294, 320, 529
NspI	RCATGY	2 cut(s)	294, 529
PagI	TCATGA	2 cut(s)	189, 247
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	70, 73
PsiI	TTATAA	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	335, 619
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	2 cut(s)	43, 524
RsaNI	GTAC	2 cut(s)	42, 523
SaqAI	TTAA	3 cut(s)	183, 254, 423
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	3 cut(s)	166, 435, 507
Sau96I	GGNCC	2 cut(s)	335, 619
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	6 cut(s)	148, 208, 340, 468, 477, 634
SfaNI	GCATC	1 cut(s)	117
SinI	GGWCC	2 cut(s)	335, 619
SpeI	ACTAGT	2 cut(s)	355, 565
Sse9I	AATT	6 cut(s)	37, 184, 193, 431, 574, 582
SsiI	CCGC	2 cut(s)	69, 622
SspMI	CTAG	2 cut(s)	356, 566
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	165
TasI	AATT	6 cut(s)	37, 184, 193, 431, 574, 582
TatI	WGTACW	2 cut(s)	41, 522
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	3 cut(s)	183, 254, 423
Tru9I	TTAA	3 cut(s)	183, 254, 423
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	5 cut(s)	48, 178, 206, 444, 462
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	335, 619
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	2 cut(s)	294, 529
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	2 cut(s)	356, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.