Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

75236951 .. 75243006

Gene Structure 6056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAGTTACAGCGGCACTAGTATTGATTGTAAAGATTCTTGTTGGCAAAACTGTGACTGGATGCCAGTTTTGGAGTGTAGACTGTGAATTCATTGAAAACCCTCAGTCAACTGGTGCTGCAAGTAGTTTCGTGTTGACGAAACTAACAAAATCATCACCCCATGAAAATGGTGAGAAGAGGATAACGGTCGATCACAACAAACTGCTTAATTTCATGAATTCTAATAGACCTGCTGGTGTGAATGGACTTCAAAATGATGGAAGGGTGGGTCATGATTTAAGCGAATTTAGTTATACATCTGTGCTGGAGGCCACATGCAACTTCTCTGAAGAAAACAAGCTTGGAGAAGGGGGATTTGGACCTGTTTATAAGGGAAAACTAGTGATGGGACAAGAAATAGCAGTGAAGAGGCTCTCAAAATGTTCCGGGCAAGGAACTTTAGAGTTTAAGAATGAATTGATCATCGTATATGAACTTCAACATACAAACCTTGTTCAGCTTTGTGGATTTTGCATTCATGGTGAAGAGAGGATCTTGATATATGAGTACATGCCAAACAAGAGTTTAGACTACTTTTTATTTGGTAAACTAGTAGACAATTTGGTAATTGTTTATTTTGTTCTGCACGAAGAATCAAGGGTGGACCGCCATTTAGCTACTAACTATGTAGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

25.27

Weight (kDa)

5.81

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	110 - 194	1e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	112 - 195	3.1e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	81, 597
AciI	CCGC	2 cut(s)	14, 649
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	3 cut(s)	89, 220, 287
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	98, 254, 482, 677
AhlI	ACTAGT	3 cut(s)	19, 382, 592
AjuI	GAANNNNNNNTTGG	4 cut(s)	327, 342, 359, 374
AluBI	AGCT	3 cut(s)	343, 502, 659
AluI	AGCT	3 cut(s)	343, 502, 659
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	3 cut(s)	89, 220, 287
AspS9I	GGNCC	2 cut(s)	362, 646
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	150, 185, 536
AvaII	GGWCC	2 cut(s)	362, 646
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	254, 382
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	430
BcuI	ACTAGT	3 cut(s)	19, 382, 592
BfaI	CTAG	3 cut(s)	20, 383, 593
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	15, 120
BlsI	GCNGC	2 cut(s)	16, 121
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	362, 646
BmgT120I	GGNCC	2 cut(s)	362, 646
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	430
Bse1I	ACTGG	3 cut(s)	64, 67, 118
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	3 cut(s)	64, 67, 118
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	193, 462, 534
BspACI	CCGC	2 cut(s)	14, 649
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	2 cut(s)	216, 274
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	64, 67, 118
BssMI	GATC	3 cut(s)	193, 462, 534
Bst4CI	ACNGT	3 cut(s)	55, 86, 190
Bst6I	CTCTTC	3 cut(s)	173, 404, 522
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	196, 465, 537
BstMBI	GATC	3 cut(s)	193, 462, 534
BstMCI	CGRYCG	1 cut(s)	192
BstNSI	RCATGY	2 cut(s)	321, 556
BstSCI	CCNGG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	241
CciI	TCATGA	2 cut(s)	216, 274
Cfr13I	GGNCC	2 cut(s)	362, 646
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	164, 217, 275, 318, 521, 553
CviJI	RGCY	5 cut(s)	314, 343, 415, 502, 659
CviKI_1	RGCY	5 cut(s)	314, 343, 415, 502, 659
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	3 cut(s)	195, 464, 536
DpnII	GATC	3 cut(s)	193, 462, 534
Eam1104I	CTCTTC	3 cut(s)	173, 404, 522
EarI	CTCTTC	3 cut(s)	173, 404, 522
Eco47I	GGWCC	2 cut(s)	362, 646
Eco57I	CTGAAG	1 cut(s)	351
EcoRI	GAATTC	2 cut(s)	89, 220
FaeI	CATG	6 cut(s)	167, 220, 278, 321, 524, 556
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	6 cut(s)	163, 216, 274, 317, 520, 552
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	2 cut(s)	81, 597
Fnu4HI	GCNGC	2 cut(s)	15, 120
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	15, 120
FspBI	CTAG	3 cut(s)	20, 383, 593
GluI	GCNGC	2 cut(s)	15, 120
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	6 cut(s)	167, 220, 278, 321, 524, 556
HincII	GTYRAC	2 cut(s)	111, 138
HindII	GTYRAC	2 cut(s)	111, 138
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	37, 635
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	3 cut(s)	150, 185, 536
Hpy166II	GTNNAC	6 cut(s)	82, 111, 138, 590, 598, 646
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	217, 275, 538
Hpy8I	GTNNAC	6 cut(s)	82, 111, 138, 590, 598, 646
HpyAV	CCTTC	2 cut(s)	258, 344
HpyCH4III	ACNGT	3 cut(s)	55, 86, 190
HpyCH4V	TGCA	4 cut(s)	122, 321, 516, 628
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	167, 220, 278, 321, 524, 556
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	193, 462, 534
LpnPI	CCDG	8 cut(s)	45, 80, 99, 222, 246, 293, 378, 442
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	3 cut(s)	20, 383, 593
MaeIII	GTNAC	2 cut(s)	7, 55
MalI	GATC	3 cut(s)	195, 464, 536
MboI	GATC	3 cut(s)	193, 462, 534
MboII	GAAGA	5 cut(s)	190, 344, 421, 539, 644
MflI	RGATCY	1 cut(s)	534
MluCI	AATT	7 cut(s)	89, 211, 220, 287, 458, 601, 609
MnlI	CCTC	5 cut(s)	114, 174, 304, 405, 525
MseI	TTAA	3 cut(s)	210, 281, 450
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	516
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	193, 462, 534
NlaIII	CATG	6 cut(s)	167, 220, 278, 321, 524, 556
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	321, 556
PagI	TCATGA	2 cut(s)	216, 274
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	37, 635
PkrI	GCNGC	2 cut(s)	16, 121
PsiI	TTATAA	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	362, 646
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	210, 281, 450
SatI	GCNGC	2 cut(s)	15, 120
Sau3AI	GATC	3 cut(s)	193, 462, 534
Sau96I	GGNCC	2 cut(s)	362, 646
ScrFI	CCNGG	1 cut(s)	430
SetI	ASST	6 cut(s)	235, 345, 367, 495, 504, 661
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	2 cut(s)	362, 646
SmiMI	CAYNNNNRTG	1 cut(s)	168
SpeI	ACTAGT	3 cut(s)	19, 382, 592
Sse9I	AATT	7 cut(s)	89, 211, 220, 287, 458, 601, 609
SsiI	CCGC	2 cut(s)	14, 649
SspMI	CTAG	3 cut(s)	20, 383, 593
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	55, 86, 190
TaqI	TCGA	1 cut(s)	192
TasI	AATT	7 cut(s)	89, 211, 220, 287, 458, 601, 609
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	37, 635
Tru1I	TTAA	3 cut(s)	210, 281, 450
Tru9I	TTAA	3 cut(s)	210, 281, 450
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	7 cut(s)	82, 180, 205, 233, 471, 489, 509
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	362, 646
XapI	RAATTY	3 cut(s)	89, 220, 287
XceI	RCATGY	2 cut(s)	321, 556
XmiI	GTMKAC	2 cut(s)	81, 597
XspI	CTAG	3 cut(s)	20, 383, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.