Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4059500 .. 4059974

Gene Structure 475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1060000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTGGTATATGAGTACATGCCAAACATAAGTTTGGACAACTTTTTATTTGATTCTACCAGAGCTCTACTAGATTGGAAGAGGCGTTTCAGTATAATTGAAGGAATAGCTCAAGGATTGCTTTACTTGCACAAATACTCGAGAATGAGAGTAATTCATAGAGATTTGAAACCTAGTAACATATTACTTGATGAAAATATGAACCCCAAAATATCAGATTTTGGTATGGCAAGGATTTTCACCTATAATGAATTGGAAGCAAATACTGTTAGGATTGTTGGGACACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

97

Amino Acids

11.37

Weight (kDa)

9.1

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 82	6.8e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 90	6.4e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	101, 169
AluBI	AGCT	2 cut(s)	65, 110
AluI	AGCT	2 cut(s)	65, 110
Alw21I	GWGCWC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	71, 174
BmeT110I	CYCGRG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	268, 288
Bst6I	CTCTTC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	2 cut(s)	65, 110
CviKI_1	RGCY	2 cut(s)	65, 110
CviQI	GTAC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	1 cut(s)	22
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	71, 174
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	268, 288
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	22
LpnPI	CCDG	1 cut(s)	73
MaeI	CTAG	2 cut(s)	71, 174
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	96, 153, 251
MnlI	CCTC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	22
NspI	RCATGY	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	67, 112, 175, 245
Sfr274I	CTCGAG	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	111, 139
SmoI	CTYRAG	2 cut(s)	111, 139
Sse9I	AATT	3 cut(s)	96, 153, 251
SspMI	CTAG	2 cut(s)	71, 174
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	268, 288
TaqI	TCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	96, 153, 251
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	53
TspDTI	ATGAA	4 cut(s)	146, 207, 215, 264
XceI	RCATGY	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	139
XspI	CTAG	2 cut(s)	71, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.