Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

16682510 .. 16683582

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG201000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATGCTTCTGGAATCTGTTCTTCTTCTGCTTCCGCTTCTTCTATGCCTCCACTTCCGTATCGCCGTCTCCGAAATCTTCTTCGAAGAGCGATTTGAAGATGGGTGGAAGAGTCGGTGGGTGTTGTCGGACTGGAAAAGGGCCGAAGGAAAAGCAGGAACGTTTAAGTACACTGCAGGGAAATGGTCTGGAGATCCTGATGATAAAGAACGGTTGCAAAAACTAAGGCATGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

79

Amino Acids

9.38

Weight (kDa)

6.73

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclI	AACGTT	1 cut(s)	161
AclWI	GGATC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	84
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	193, 234
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	193, 234
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	81, 104
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	196, 237
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	193, 234
BstSFI	CTRYAG	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	193, 234
BstYI	RGATCY	2 cut(s)	193, 234
BsuRI	GGCC	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	195, 236
DpnII	GATC	2 cut(s)	193, 234
Eam1104I	CTCTTC	2 cut(s)	81, 104
EarI	CTCTTC	2 cut(s)	81, 104
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	46, 231
FatI	CATG	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	2 cut(s)	14, 112
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	3 cut(s)	73, 130, 239
Hpy188III	TCNNGA	3 cut(s)	11, 189, 197
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	176, 217
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	193, 234
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	5 cut(s)	118, 141, 162, 174, 210
MaeII	ACGT	1 cut(s)	161
MalI	GATC	2 cut(s)	195, 236
MboI	GATC	2 cut(s)	193, 234
MboII	GAAGA	8 cut(s)	14, 17, 32, 70, 73, 98, 110, 121
MflI	RGATCY	2 cut(s)	193, 234
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	165
NdeII	GATC	2 cut(s)	193, 234
NlaIII	CATG	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	193, 234
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	193, 234
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	121
SetI	ASST	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	84
SgeI	CNNG	6 cut(s)	23, 145, 168, 189, 201, 209
SsiI	CCGC	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	84
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.