Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006827.1

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

51237 .. 53113

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006827.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgaattctgatagacctgctggtgtgaatggacttcaaaatgatggaagggtgggtcatgatttaagcgtatttagttatacatctgtgctggaggccacatgcaacttctctgaagaaaacaagcatggagaacggggatttggacctgtttataagggaaaactagtgatgggacaagaaatagcagtgaagaggctctcaaaatgttccgggcaaggaactttagagtttaagaatgaattgatcatcgtatatgaacttcaacatacaaaccttgttcagctttatggattttgcatttatggtgaagagaggatcttgatatatggccaatcgacctacctgtcagatgcaatatctctgttgatcactgaaaacttgccattacctgcacctacaaagcctgcattttcggcggaaaggaatgcgccaattgctggtatagtcgggacggaaccagaaattttatcagtaaatggtttgaccatttctaatttagtttcacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

170

Amino Acids

18.52

Weight (kDa)

5.39

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AasI	GACNNNNNNGTC	1 cut(s)	346
Acc36I	ACCTGC	2 cut(s)	25, 400
AccB7I	CCANNNNNTGG	1 cut(s)	440
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	4, 465
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	38, 266
AhlI	ACTAGT	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	96, 331
ApoI	RAATTY	2 cut(s)	4, 465
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BccI	CCATC	2 cut(s)	38, 166
BclI	TGATCA	2 cut(s)	246, 369
BcnI	CCSGG	1 cut(s)	214
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	1 cut(s)	167
BfuAI	ACCTGC	2 cut(s)	25, 400
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	98, 333
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	189, 466
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	189, 466
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	98, 333
Bsp143I	GATC	3 cut(s)	246, 318, 369
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	98, 333
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	25, 400
BspPI	GGATC	1 cut(s)	326
BssMI	GATC	3 cut(s)	246, 318, 369
Bst6I	CTCTTC	2 cut(s)	188, 306
BstC8I	GCNNGC	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	249, 321, 372
BstMBI	GATC	3 cut(s)	246, 318, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 437
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	98, 333
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 372
BveI	ACCTGC	2 cut(s)	25, 400
Cac8I	GCNNGC	1 cut(s)	408
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	3 cut(s)	59, 102, 128
CviJI	RGCY	5 cut(s)	98, 199, 286, 333, 406
CviKI_1	RGCY	5 cut(s)	98, 199, 286, 333, 406
DpnI	GATC	3 cut(s)	248, 320, 371
DpnII	GATC	3 cut(s)	246, 318, 369
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	188, 306
EarI	CTCTTC	2 cut(s)	188, 306
EciI	GGCGGA	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	3 cut(s)	62, 105, 131
FaqI	GGGAC	2 cut(s)	189, 466
FatI	CATG	3 cut(s)	58, 101, 127
FbaI	TGATCA	2 cut(s)	246, 369
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	98, 333
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	62, 105, 131
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	10, 115, 352
Hpy188III	TCNNGA	3 cut(s)	59, 322, 451
HpyAV	CCTTC	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	5 cut(s)	105, 300, 356, 395, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 437
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	3 cut(s)	62, 105, 131
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	2 cut(s)	246, 369
Kzo9I	GATC	3 cut(s)	246, 318, 369
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	508
MalI	GATC	3 cut(s)	248, 320, 371
MboI	GATC	3 cut(s)	246, 318, 369
MboII	GAAGA	3 cut(s)	128, 205, 323
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	5 cut(s)	4, 242, 435, 465, 496
MluNI	TGGCCA	1 cut(s)	333
MnlI	CCTC	3 cut(s)	88, 189, 309
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	65, 234
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	416, 437
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	246, 318, 369
NlaIII	CATG	3 cut(s)	62, 105, 131
NlaIV	GGNNCC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	105
PagI	TCATGA	1 cut(s)	58
PctI	GAATGC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	65, 234
Sau3AI	GATC	3 cut(s)	246, 318, 369
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	9 cut(s)	19, 151, 279, 288, 344, 348, 394, 400, 511
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	5 cut(s)	4, 242, 435, 465, 496
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	212
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	338
TasI	AATT	5 cut(s)	4, 242, 435, 465, 496
Tru1I	TTAA	2 cut(s)	65, 234
Tru9I	TTAA	2 cut(s)	65, 234
TscAI	CASTG	2 cut(s)	195, 379
TspDTI	ATGAA	3 cut(s)	17, 255, 273
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	2 cut(s)	195, 379
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	4, 465
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.