Rroxscaffold_1G00053800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001337
Physical Location & Seq
Forward (+)
74992605 .. 74999867
7263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053800.1

Sequence Viewer

Length: 552 bp
ATGAATTCTAATAGACCTGCTGGTGTGAATGGACTTCAAAATGATGGAAGGGTGGGTCATGATTTAAGCGAATTTAGTTATACATCTGTGCTGGAGGCCACATGCAACTTCTCTGAAGAAAACAAGCTTGGAGAAGGGGGATTTGGACCTGTTTATAAGGGAAAACTAGTGATGGGACAAGAAATAGCAGTGAAGAGGCTCTCAAAATGTTCCGGGCAAGGAACTTTAGAGTTTAAGAATGAATTGATCATCGTATATGAACTTCAACATACAAACCTTGTTCAGCTTTGTGGATTTTGCATTCATGGTGAAGAGAGGATCTTGATATATGAGTACATGCCAAACAAGAGTTTAGACTACTTTTTATTTGATTCAACCAGAGGCGTTCTTCTAGATTGGAATAGGCGTTTCAGCATAATTGAAGGAATTGCTCAAGGCATGGAAGTTATGGAAAGAAGGTGCAGGGCTAAAGTTAATGGATACAACACTAGGCATATCATTCAATACAGATCAACTGTTAAGATGCGTCCATGTTGGTCTGCTATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

183

Amino Acids

20.86

Weight (kDa)

8.15

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 38 - 150 2.3e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 40 - 153 5.2e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 2 cut(s) 4, 71
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 5 cut(s) 38, 266, 375, 422, 503
AhlI ACTAGT 1 cut(s) 166
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 126, 143, 158
AluBI AGCT 2 cut(s) 127, 286
AluI AGCT 2 cut(s) 127, 286
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 2 cut(s) 4, 71
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BccI CCATC 2 cut(s) 38, 166
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 214
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 3 cut(s) 167, 392, 489
BfuAI ACCTGC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 246, 318, 509
BspANI GGCC 1 cut(s) 98
BspHI TCATGA 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 326
BssMI GATC 3 cut(s) 246, 318, 509
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 2 cut(s) 188, 306
BstKTI GATC 3 cut(s) 249, 321, 512
BstMBI GATC 3 cut(s) 246, 318, 509
BstNSI RCATGY 2 cut(s) 105, 340
BstSCI CCNGG 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 334
CviAII CATG 6 cut(s) 59, 102, 305, 337, 439, 531
CviJI RGCY 5 cut(s) 98, 127, 199, 286, 467
CviKI_1 RGCY 5 cut(s) 98, 127, 199, 286, 467
CviQI GTAC 1 cut(s) 334
DpnI GATC 3 cut(s) 248, 320, 511
DpnII GATC 3 cut(s) 246, 318, 509
Eam1104I CTCTTC 2 cut(s) 188, 306
EarI CTCTTC 2 cut(s) 188, 306
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 6 cut(s) 62, 105, 308, 340, 442, 534
FaqI GGGAC 1 cut(s) 189
FatI CATG 6 cut(s) 58, 101, 304, 336, 438, 530
FbaI TGATCA 1 cut(s) 246
FspBI CTAG 3 cut(s) 167, 392, 489
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 515
Hin1II CATG 6 cut(s) 62, 105, 308, 340, 442, 534
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 59, 322, 392
HpyAV CCTTC 4 cut(s) 42, 128, 416, 450
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 3 cut(s) 105, 300, 462
Hsp92II CATG 6 cut(s) 62, 105, 308, 340, 442, 534
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 3 cut(s) 246, 318, 509
LpnPI CCDG 7 cut(s) 6, 30, 77, 162, 226, 391, 448
LweI GCATC 1 cut(s) 513
MaeI CTAG 3 cut(s) 167, 392, 489
MalI GATC 3 cut(s) 248, 320, 511
MboI GATC 3 cut(s) 246, 318, 509
MboII GAAGA 4 cut(s) 128, 205, 323, 380
MflI RGATCY 1 cut(s) 318
MluCI AATT 5 cut(s) 4, 71, 242, 417, 426
MnlI CCTC 4 cut(s) 88, 189, 309, 374
MseI TTAA 4 cut(s) 65, 234, 474, 519
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 246, 318, 509
NlaIII CATG 6 cut(s) 62, 105, 308, 340, 442, 534
NspI RCATGY 2 cut(s) 105, 340
PagI TCATGA 1 cut(s) 58
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 156
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 4 cut(s) 65, 234, 474, 519
Sau3AI GATC 3 cut(s) 246, 318, 509
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 214
SetI ASST 6 cut(s) 19, 129, 151, 279, 288, 461
SfaNI GCATC 1 cut(s) 513
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 5 cut(s) 4, 71, 242, 417, 426
SspMI CTAG 3 cut(s) 167, 392, 489
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 517
TasI AATT 5 cut(s) 4, 71, 242, 417, 426
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 4 cut(s) 65, 234, 474, 519
Tru9I TTAA 4 cut(s) 65, 234, 474, 519
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 17, 255, 273, 293
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 4, 71
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 2 cut(s) 105, 340
XspI CTAG 3 cut(s) 167, 392, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.