RchiOBHm_Chr5g0026461

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
20529536 .. 20530221
686 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30604

Sequence Viewer

Length: 492 bp
ATGTTTGGAAGAAGGATGGTAAGTTGTTTGTATTCTTCTGACCCCTCCATTCTCCTCGTACTTCAGTTTTGTAGTGAGTTATTTAAATTTGATTGTATAAATGAAAAAGGAGCAGTACCATTTTTAGTATATAAGTTTATTGAAAGAAGTAACAAATCATGCTTCCTTTACTTAATTTCAGCAGGAAAACTGAGCCGCTGCCACAAGGAAAATCTGGAATTACCATTGTTTGACTTGGCTACCGTTGTTAATGCAACCTGTAACTTCTCAGACGACAATAAACTAGGAGAAGGTGACTCTGGATCTGTCTTTAAGGCTCTCAAGAGACTCTATGCCAGACTTCAGCACAGGAATCTAGTGAAGCTTCTAGGGTGCTGCATTCAACAAGATGAAATGATGCTGATCTACAAATGCATGACCAACAAAAGCTTAGACTTCTGTATTTTGAGTGTGCCGGCTGCTTTTCTAATGTTGAGTGGTGAAGGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

163

Amino Acids

18.37

Weight (kDa)

8.31

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 47, 326
AfaI GTAC 2 cut(s) 60, 117
AgsI TTSAA 2 cut(s) 143, 383
AluBI AGCT 2 cut(s) 364, 429
AluI AGCT 2 cut(s) 364, 429
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 198, 375, 458
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 305, 491
BbvI GCAGC 3 cut(s) 185, 362, 445
BccI CCATC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 3 cut(s) 284, 356, 368
BisI GCNGC 4 cut(s) 196, 199, 376, 459
BlsI GCNGC 4 cut(s) 197, 200, 377, 460
BmsI GCATC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 401
BseGI GGATG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 401
BseMII CTCAG 2 cut(s) 182, 282
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 3 cut(s) 185, 362, 445
BsiSI CCGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 302, 402
BspACI CCGC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 183, 281
BspPI GGATC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 454
BssMI GATC 2 cut(s) 302, 402
Bst4CI ACNGT 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 191, 268, 430
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 305, 405
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 302, 402
BstV1I GCAGC 3 cut(s) 185, 362, 445
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 454
Csp6I GTAC 2 cut(s) 59, 116
CviAII CATG 2 cut(s) 159, 415
CviJI RGCY 6 cut(s) 195, 239, 317, 364, 429, 458
CviKI_1 RGCY 6 cut(s) 195, 239, 317, 364, 429, 458
CviQI GTAC 2 cut(s) 59, 116
DdeI CTNAG 3 cut(s) 191, 268, 430
DpnI GATC 2 cut(s) 304, 404
DpnII GATC 2 cut(s) 302, 402
DraI TTTAAA 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 47, 326
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 2 cut(s) 162, 418
FaiI YATR 6 cut(s) 98, 130, 132, 160, 333, 416
FatI CATG 2 cut(s) 158, 414
Fnu4HI GCNGC 4 cut(s) 196, 199, 376, 459
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 4 cut(s) 196, 199, 376, 459
FspBI CTAG 3 cut(s) 284, 356, 368
GluI GCNGC 4 cut(s) 196, 199, 376, 459
HapII CCGG 1 cut(s) 455
Hin1II CATG 2 cut(s) 162, 418
HindIII AAGCTT 2 cut(s) 362, 427
HinfI GANTC 3 cut(s) 296, 327, 352
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 305, 491
Hpy188I TCNGA 2 cut(s) 40, 271
Hpy188III TCNNGA 3 cut(s) 215, 300, 322
HpyAV CCTTC 3 cut(s) 6, 284, 476
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 254, 378, 414
HpyF3I CTNAG 3 cut(s) 191, 268, 430
Hsp92II CATG 2 cut(s) 162, 418
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 2 cut(s) 302, 402
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 7 cut(s) 168, 200, 271, 285, 334, 349, 468
Lsp1109I GCAGC 3 cut(s) 185, 362, 445
LweI GCATC 1 cut(s) 387
MaeI CTAG 3 cut(s) 284, 356, 368
MaeIII GTNAC 3 cut(s) 149, 260, 293
MalI GATC 2 cut(s) 304, 404
MboI GATC 2 cut(s) 302, 402
MboII GAAGA 2 cut(s) 21, 27
MflI RGATCY 1 cut(s) 302
MluCI AATT 3 cut(s) 86, 174, 218
MlyI GAGTC 2 cut(s) 290, 321
MnlI CCTC 2 cut(s) 55, 65
Mph1103I ATGCAT 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 454
MseI TTAA 4 cut(s) 84, 173, 249, 312
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 378
NaeI GCCGGC 1 cut(s) 456
NdeII GATC 2 cut(s) 302, 402
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 162, 418
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 416
PctI GAATGC 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 4 cut(s) 197, 200, 377, 460
PleI GAGTC 2 cut(s) 290, 321
PpsI GAGTC 2 cut(s) 290, 321
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 2 cut(s) 60, 117
RsaNI GTAC 2 cut(s) 59, 116
SaqAI TTAA 4 cut(s) 84, 173, 249, 312
SatI GCNGC 4 cut(s) 196, 199, 376, 459
Sau3AI GATC 2 cut(s) 302, 402
SchI GAGTC 2 cut(s) 290, 321
SetI ASST 5 cut(s) 260, 295, 366, 431, 487
SfaNI GCATC 1 cut(s) 387
SmiI ATTTAAAT 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 86, 174, 218
SsiI CCGC 1 cut(s) 196
SspMI CTAG 3 cut(s) 284, 356, 368
SwaI ATTTAAAT 1 cut(s) 85
TaaI ACNGT 1 cut(s) 244
TasI AATT 3 cut(s) 86, 174, 218
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 4 cut(s) 84, 173, 249, 312
Tru9I TTAA 4 cut(s) 84, 173, 249, 312
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 3 cut(s) 198, 375, 458
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 117, 405
XapI RAATTY 1 cut(s) 86
XspI CTAG 3 cut(s) 284, 356, 368
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.