MD10G1207900.v1.1

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
30747707 .. 30748128
422 bp
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UTR
Exon/CDS
Intron
MD10G1207900.v1.1.491

Sequence Viewer

Length: 357 bp
ATGAAATCTGATCGACCTACTGATGCTACTGCACTTCAAAATGATGGAAATATGAGACCTGATTTAAGTATCTTTAGTTATGCATCTGTAATGGCTGCCACATGTAATTTCTCACCAGAAAACAAGCTCGGACAAGGGGGATTTGGTCCGGTTTATAAGGTGAGATATTGTGCATCACTAATTCAGGGAAAATTGGTGACGGGACAAGAAGTAGCTGTTAAGAGGCTTTCAAAATGTTCAGGGCAAGGATCATTGGAGTTTAAGAATGAATTGATACTCATATATGAACTCCAACATAAAAACCTTGTCAAACTTTTTGGATTTTGCATTCATGGTGAAGAAAGGATGCTCATATAA

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

8.72

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 39 - 117 3.7e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 40 - 118 1.1e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AclWI GGATC 1 cut(s) 256
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 38, 231
AluBI AGCT 2 cut(s) 127, 215
AluI AGCT 2 cut(s) 127, 215
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 105, 172, 208, 347
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 49
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 4 cut(s) 13, 92, 182, 336
BsaI GGTCTC 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 148
BseGI GGATG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 10, 248
BspPI GGATC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 49
BssMI GATC 2 cut(s) 10, 248
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 2 cut(s) 13, 251
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 10, 248
BstNSI RCATGY 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 102, 332
CviJI RGCY 4 cut(s) 95, 127, 215, 226
CviKI_1 RGCY 4 cut(s) 95, 127, 215, 226
DpnI GATC 2 cut(s) 12, 250
DpnII GATC 2 cut(s) 10, 248
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 85
FaeI CATG 2 cut(s) 105, 335
FaqI GGGAC 1 cut(s) 216
FatI CATG 2 cut(s) 101, 331
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 149
Hin1II CATG 2 cut(s) 105, 335
HpaII CCGG 1 cut(s) 149
HphI GGTGA 4 cut(s) 105, 172, 208, 347
Hpy188I TCNGA 2 cut(s) 10, 131
HpyCH4V TGCA 4 cut(s) 32, 83, 173, 327
Hsp92II CATG 2 cut(s) 105, 335
Kzo9I GATC 2 cut(s) 10, 248
LpnPI CCDG 5 cut(s) 72, 129, 162, 170, 225
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 4 cut(s) 13, 92, 182, 336
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 12, 250
MboI GATC 2 cut(s) 10, 248
MboII GAAGA 1 cut(s) 350
MluCI AATT 4 cut(s) 106, 180, 191, 269
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 3 cut(s) 65, 219, 261
MspI CCGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 327
NdeII GATC 2 cut(s) 10, 248
NlaIII CATG 2 cut(s) 105, 335
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 105
PciI ACATGT 1 cut(s) 101
PctI GAATGC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 101
PsiI TTATAA 1 cut(s) 156
PspPI GGNCC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 65, 219, 261
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 10, 248
Sau96I GGNCC 1 cut(s) 146
SetI ASST 6 cut(s) 19, 61, 129, 162, 217, 306
SfaNI GCATC 4 cut(s) 13, 92, 182, 336
SinI GGWCC 1 cut(s) 146
Sse9I AATT 4 cut(s) 106, 180, 191, 269
TaqI TCGA 1 cut(s) 13
TasI AATT 4 cut(s) 106, 180, 191, 269
Tru1I TTAA 3 cut(s) 65, 219, 261
Tru9I TTAA 3 cut(s) 65, 219, 261
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 4 cut(s) 17, 282, 300, 320
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.