Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Reverse (-)

26554657 .. 26555164

Gene Structure 508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48788

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTTCCTTCACCTATAAAAGGAATGCCTCCTCCCACAACTCAAATCATCACATTACATCTCATGTAATCCCCTTGGGCCGCAAGGCTCAACACACTAGTGTAACATTCAAGTGGACGTACTATACATCTCGTGGTAAGCTTCCCAAGGGAGAAGAGATAGCAGTGAAAAGGCTCTCTATGGATTCTGGACAAGGAGATTTAGAATTCAAAAATGATGTCTTACTAGTGGCCAGGCTTCAACACAGAAATTTAGTTAGACTTCTCGGTTTCTGCTTGGAAGGAAATGAAAGGCTTCTTGTCTATGAGTACCTCCCTAACACAAGTCTTGATCACATCATATTTGGTATGACCGACTTCTACATTTTCTTCAACTTCAAAAATCTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

130

Amino Acids

15.08

Weight (kDa)

9.48

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	49 - 113	2.1e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	50 - 114	7.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	206, 250
AfaI	GTAC	2 cut(s)	122, 311
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	5 cut(s)	112, 211, 242, 373, 379
AhlI	ACTAGT	2 cut(s)	98, 226
AjnI	CCWGG	1 cut(s)	233
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AoxI	GGCC	2 cut(s)	79, 231
ApoI	RAATTY	2 cut(s)	206, 250
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	233
BauI	CACGAG	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	331
BcuI	ACTAGT	2 cut(s)	98, 226
BfaI	CTAG	2 cut(s)	99, 227
BfmI	CTRYAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	75, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	75, 147
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	81, 233
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	81, 233
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	81, 233
BssECI	CCNNGG	2 cut(s)	75, 147
BssMI	GATC	1 cut(s)	331
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	75, 147
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	81, 233
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	121, 310
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	8 cut(s)	5, 81, 89, 142, 175, 233, 238, 295
CviKI_1	RGCY	8 cut(s)	5, 81, 89, 142, 175, 233, 238, 295
CviQI	GTAC	2 cut(s)	121, 310
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	75, 147
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	75, 147
ErhI	CCWWGG	2 cut(s)	75, 147
FaeI	CATG	1 cut(s)	68
FaiI	YATR	8 cut(s)	18, 66, 126, 182, 306, 341, 350, 391
FatI	CATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	2 cut(s)	99, 227
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	81, 233
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	189, 329
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	19, 275
HpyCH4IV	ACGT	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	3 cut(s)	174, 220, 247
MaeI	CTAG	2 cut(s)	99, 227
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	167, 361
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	2 cut(s)	206, 250
MluNI	TGGCCA	1 cut(s)	233
MnlI	CCTC	3 cut(s)	40, 43, 323
Mox20I	TGGCCA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	99, 112
Msp20I	TGGCCA	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	99
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	122, 311
RsaNI	GTAC	2 cut(s)	121, 310
RseI	CAYNNNNRTG	2 cut(s)	99, 112
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	4 cut(s)	17, 122, 144, 315
SfcI	CTRYAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	99, 112
SpeI	ACTAGT	2 cut(s)	98, 226
Sse9I	AATT	2 cut(s)	206, 250
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	99, 227
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	75, 147
TaiI	ACGT	1 cut(s)	122
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	2 cut(s)	206, 250
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	206, 250
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	99, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.