Rh5BG471500

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001337
Physical Location & Seq
Reverse (-)
75071789 .. 75073332
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG471500.1

Sequence Viewer

Length: 315 bp
ATGATTCATGATGACGATATCCACTATTCAGATGTTAGAAGATTGCTGGATTGCATAATAGATTACTGTGAAGAAGAAAGGGAAGACATGGAGTTGCCGCTATTTGACTTCACCACTATTGCTGATGTCACTGATAACTTTTCAAGCAACAACAAACTGGGACAAGGCGGTTTTGGACCTGTGTACAAGGGCAAGTTTCCAATTGACATGCACCATACCAGGACGTCTAGAGTTCTTAGCATCCTCCTGGCAACAATGTACGATGGTTCGTTTCGCGCTGCCAAGTATGTTAAGCATATGACTAAGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

104

Amino Acids

12.03

Weight (kDa)

5.64

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 227
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 98, 168
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 2 cut(s) 185, 260
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 2 cut(s) 218, 246
ApeKI GCWGC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 2 cut(s) 220, 248
BfaI CTAG 1 cut(s) 228
BisI GCNGC 2 cut(s) 98, 279
BlsI GCNGC 2 cut(s) 99, 280
Bme1390I CCNGG 2 cut(s) 220, 248
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 220, 248
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 220, 248
BseGI GGATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 183
BspACI CCGC 2 cut(s) 98, 168
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 220, 248
Bst4CI ACNGT 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 236, 303
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 278
BstNI CCWGG 2 cut(s) 220, 248
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 218, 246
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 1 cut(s) 7
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 184, 259
CviAII CATG 4 cut(s) 8, 88, 208, 312
CviQI GTAC 2 cut(s) 184, 259
DdeI CTNAG 2 cut(s) 236, 303
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 218, 246
EcoRV GATATC 1 cut(s) 19
FaeI CATG 4 cut(s) 11, 91, 211, 315
FaiI YATR 9 cut(s) 9, 56, 89, 209, 216, 288, 297, 299, 313
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 7, 87, 207, 311
FauNDI CATATG 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 98, 279
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 98, 279
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 98, 279
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 4 cut(s) 11, 91, 211, 315
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 8, 228
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 54, 211
HpyF3I CTNAG 2 cut(s) 236, 303
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 4 cut(s) 11, 91, 211, 315
HspAI GCGC 1 cut(s) 276
LpnPI CCDG 7 cut(s) 32, 143, 192, 205, 232, 233, 260
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 4 cut(s) 51, 83, 86, 95
MfeI CAATTG 1 cut(s) 201
MluCI AATT 1 cut(s) 201
MnlI CCTC 1 cut(s) 254
MseI TTAA 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 220, 248
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 2 cut(s) 220, 248
MvnI CGCG 1 cut(s) 276
NdeI CATATG 1 cut(s) 297
NlaIII CATG 4 cut(s) 11, 91, 211, 315
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 211
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 99, 280
Psp6I CCWGG 2 cut(s) 218, 246
PspGI CCWGG 2 cut(s) 218, 246
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 2 cut(s) 185, 260
RsaNI GTAC 2 cut(s) 184, 259
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 98, 279
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 220, 248
SetI ASST 2 cut(s) 181, 227
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 98, 168
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 218, 246
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 227
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.