Rh5AG038500

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
2799568 .. 2801790
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG038500.1

Sequence Viewer

Length: 246 bp
ATGTTCCAGCACCCACTCGATTCAGCTTTCGAGATCGAATTGTATGTTGTAGGGCAGTGGAGACGGCATCAAGATGGTTGCTTTGTCCTAACAATGGTGGGGGAGAATGAAATTACTACTGTGGAGTCATTGCAGTTTGATTTTGCTACAATTGAAGCAGCCACAAACCAGTTCTCTGTTAATAATAGATTAGGGGAAGGTGGCTTTGGGGAGGTTTACAAGGTAATTATGACGTTTGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

4.33

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmsI GCATC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 121
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
CviJI RGCY 3 cut(s) 26, 161, 204
CviKI_1 RGCY 3 cut(s) 26, 161, 204
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 55
FaiI YATR 3 cut(s) 45, 230, 244
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HinfI GANTC 3 cut(s) 20, 125, 239
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 31, 71
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 233
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 20, 182
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 76
MaeII ACGT 1 cut(s) 233
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MfeI CAATTG 1 cut(s) 150
MluCI AATT 4 cut(s) 38, 111, 150, 225
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 1 cut(s) 205
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 72
MunI CAATTG 1 cut(s) 150
NdeII GATC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 20, 239
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 134
SetI ASST 5 cut(s) 28, 202, 216, 225, 236
SfaNI GCATC 1 cut(s) 76
SgeI CNNG 6 cut(s) 19, 29, 43, 83, 181, 232
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 4 cut(s) 38, 111, 150, 225
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 18, 30, 36
TasI AATT 4 cut(s) 38, 111, 150, 225
TfiI GAWTC 2 cut(s) 20, 239
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 62
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 123, 231
TspRI CASTG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.