RchiOBHm_Chr5g0025401

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
19308296 .. 19310250
1955 bp
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UTR
Exon/CDS
Intron
PRQ30506

Sequence Viewer

Length: 486 bp
ATGAATTCTAATAGACCTGCTGGTGTGAATGGACTTCAAAATGATGGAAGGGTGGGTCATGATTTAAGCGTATTTAGTTATACATCTGTGCTGGAGGCCACATGCAACTTCTCTGAAGAAAACAAGCTTGGAGAAGGGGGATTTGGACCTGTTTATAAGCTTTATGGATTTTGCATTCATGGTGAAGAGAGGATCTTGATATATGAGTACATGCCAAACAAGAGTTTAGACTACTTTTTATTTGATTCAACCAGAGGCGTTCTTCTAGATTGGAATAGGCGTTTCAGCATAATTGAAGGAATTGCTCAAGGTTTGCTTTATTTGCACAAATACTCAAGAAAGAGAGTAGTTCACAGAGATCTAAAACCCAGTAACATTCTACTTGATCAAAATATAAATCCAAAAATTTCTGATTTTGGTATGGCAAGGATTTTTGCACATAACGAATTAGAAGCAAATAGTAGTAGGATTGTTGGGACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.34

Weight (kDa)

7.8

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 51 - 149 2.7e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 52 - 160 1.9e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 2 cut(s) 4, 405
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 3 cut(s) 38, 249, 296
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 126, 143, 158
AluBI AGCT 2 cut(s) 127, 160
AluI AGCT 2 cut(s) 127, 160
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 2 cut(s) 4, 405
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 146
BccI CCATC 1 cut(s) 38
BclI TGATCA 1 cut(s) 385
BfaI CTAG 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 25
BglII AGATCT 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 291, 319
Bse1I ACTGG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 369
BshFI GGCC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 192, 358, 385
BspANI GGCC 1 cut(s) 98
BspHI TCATGA 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 369
BssMI GATC 3 cut(s) 192, 358, 385
Bst6I CTCTTC 1 cut(s) 180
BstKTI GATC 3 cut(s) 195, 361, 388
BstMBI GATC 3 cut(s) 192, 358, 385
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNSI RCATGY 2 cut(s) 105, 214
BstX2I RGATCY 2 cut(s) 192, 358
BstYI RGATCY 2 cut(s) 192, 358
BsuRI GGCC 1 cut(s) 98
BveI ACCTGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 59, 102, 179, 211
CviJI RGCY 3 cut(s) 98, 127, 160
CviKI_1 RGCY 3 cut(s) 98, 127, 160
CviQI GTAC 1 cut(s) 208
DpnI GATC 3 cut(s) 194, 360, 387
DpnII GATC 3 cut(s) 192, 358, 385
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 4 cut(s) 62, 105, 182, 214
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 4 cut(s) 58, 101, 178, 210
FbaI TGATCA 1 cut(s) 385
FspBI CTAG 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 4 cut(s) 62, 105, 182, 214
HindIII AAGCTT 2 cut(s) 125, 158
HinfI GANTC 2 cut(s) 245, 478
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 115, 412
Hpy188III TCNNGA 4 cut(s) 59, 196, 266, 336
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 3 cut(s) 42, 128, 290
HpyCH4V TGCA 4 cut(s) 105, 174, 325, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
Hsp92II CATG 4 cut(s) 62, 105, 182, 214
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 192, 358, 385
LpnPI CCDG 6 cut(s) 6, 30, 77, 162, 265, 382
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 194, 360, 387
MboI GATC 3 cut(s) 192, 358, 385
MboII GAAGA 3 cut(s) 128, 197, 254
MflI RGATCY 2 cut(s) 192, 358
MluCI AATT 5 cut(s) 4, 291, 300, 405, 446
MlyI GAGTC 1 cut(s) 472
MnlI CCTC 3 cut(s) 88, 183, 248
MseI TTAA 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 3 cut(s) 192, 358, 385
NlaIII CATG 4 cut(s) 62, 105, 182, 214
NspI RCATGY 2 cut(s) 105, 214
PagI TCATGA 1 cut(s) 58
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 245
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PsiI TTATAA 1 cut(s) 156
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 192, 358
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 3 cut(s) 192, 358, 385
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 472
SetI ASST 5 cut(s) 19, 129, 151, 162, 313
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 306, 334
SmoI CTYRAG 2 cut(s) 306, 334
Sse9I AATT 5 cut(s) 4, 291, 300, 405, 446
SspMI CTAG 1 cut(s) 266
TasI AATT 5 cut(s) 4, 291, 300, 405, 446
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 17, 167
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 4, 405
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 2 cut(s) 105, 214
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.