Rroxscaffold_1G00053750

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74953350 .. 74954365
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053750.1

Sequence Viewer

Length: 279 bp
ATGGATTGGCACTGGTATTGCGTTTGCTGTACTGATTCAACCAGAGCTCTGTTTCTAGATTGGAAGACTCGTTTCAGTATTATTGAAGGAATCGCTCAAGGGTTGCTTTACTTGCACAAGTACTCAAGAATGCAAGTAATTCATAGAGATTTGAAACCTAGTAACATTCTACTTGATGAAAATATGAATCCCAAGATTTCTGATTTTGGTATGGCAAGGATCTTCACCCATAATGAACGGGAAGCAAAGATTAAGACTAAGAGGATTGTTGGGACATAG

Protein Analysis

92

Amino Acids

10.92

Weight (kDa)

9.15

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 20 - 85 8.3e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 24 - 89 1.3e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AfaI GTAC 2 cut(s) 31, 122
AgsI TTSAA 3 cut(s) 39, 86, 154
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 49
AlwI GGATC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 217
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 49
BfaI CTAG 2 cut(s) 56, 159
BmcAI AGTACT 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 81, 109
Bse1I ACTGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 219
BspPI GGATC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 258
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 10
Csp6I GTAC 2 cut(s) 30, 121
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
CviQI GTAC 2 cut(s) 30, 121
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 49
FaiI YATR 5 cut(s) 144, 185, 212, 231, 277
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 2 cut(s) 56, 159
HinfI GANTC 4 cut(s) 35, 67, 90, 187
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 56, 126
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 115, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 258
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 1 cut(s) 55
MaeI CTAG 2 cut(s) 56, 159
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 76, 214
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 1 cut(s) 255
MseI TTAA 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 219
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 35, 90, 187
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 2 cut(s) 31, 122
RsaNI GTAC 2 cut(s) 30, 121
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 49, 160
SmlI CTYRAG 2 cut(s) 96, 124
SmoI CTYRAG 2 cut(s) 96, 124
Sse9I AATT 1 cut(s) 138
SspMI CTAG 2 cut(s) 56, 159
SstI GAGCTC 1 cut(s) 49
TasI AATT 1 cut(s) 138
TatI WGTACW 2 cut(s) 29, 120
TfiI GAWTC 3 cut(s) 35, 90, 187
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 131, 192, 200, 249
TspRI CASTG 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 159
ZrmI AGTACT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.