RchiOBHm_Chr1g0379371

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001337
Physical Location & Seq
Forward (+)
65448834 .. 65449169
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60271

Sequence Viewer

Length: 255 bp
ATGATTCATGATGACTATATCCACTATTCAGATGTTAGAAGATTGCTGGATTGCATAATGGATTACTGTGAAGAAGAAAGGGAAGACATGGAGTTGCCGCTATTTGACTTCACCACTATTGCTGATGCCACTGATAACTTTTCAAGCAACAACAAACTGGGACAAGGTGGCTTTGGACCTGTGTACAAGGGTACATTGATAGGAGGGAAAGAAATAGCTGTAAAGAGACGATCCAAGGAACCTGGTCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

84

Amino Acids

9.59

Weight (kDa)

4.69

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 225
AfaI GTAC 2 cut(s) 185, 193
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 220
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 220
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 1 cut(s) 98
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 183
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 2 cut(s) 184, 192
CviAII CATG 2 cut(s) 8, 88
CviJI RGCY 2 cut(s) 171, 218
CviKI_1 RGCY 2 cut(s) 171, 218
CviQI GTAC 2 cut(s) 184, 192
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 2 cut(s) 11, 91
FaiI YATR 4 cut(s) 9, 18, 56, 89
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 7, 87
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 11, 91
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 8, 248
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 54
Hsp92II CATG 2 cut(s) 11, 91
Kzo9I GATC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 32, 143, 192, 228
LweI GCATC 1 cut(s) 115
MabI ACCWGGT 1 cut(s) 241
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 4 cut(s) 51, 83, 86, 95
MnlI CCTC 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NdeII GATC 1 cut(s) 230
NlaIII CATG 2 cut(s) 11, 91
NlaIV GGNNCC 1 cut(s) 240
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 2 cut(s) 185, 193
RsaNI GTAC 2 cut(s) 184, 192
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 243
SetI ASST 4 cut(s) 169, 181, 220, 244
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 115
SgeI CNNG 9 cut(s) 20, 59, 100, 156, 170, 176, 191, 199, 247
SinI GGWCC 1 cut(s) 176
SsiI CCGC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 68
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 136
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.