Rmu_sc0034978.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034978.1
Physical Location & Seq
Reverse (-)
1 .. 641
641 bp
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UTR
Exon/CDS
Intron
Rmu_sc0034978.1_g000001.1.cds

Sequence Viewer

Length: 364 bp
atgggagagaatggaataacgaatcagaacaatgacggacagaacgaagacatcgagctaccaatatttagtttgtccacaatagtcacagccactgataacttttcattcaacatgaaacttggagaaggtggctttgggcctgtatacaagggtattctagtagatgggcaagaaattgctgtgaagagactctcacgaagttcagggcaaggaccaactgagttcaaaaatgaagtactactaatagccaaacttcagcaccgaaatcttgtaaggctcctaggttgttgcattgagggagaagaaagattgttgatttatgaatacatgcccaacaacagcttggacttctaccttttcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

4.69

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 112, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 58, 345
AluI AGCT 2 cut(s) 58, 345
Alw26I GTCTC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 140
AspA2I CCTAGG 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 140, 215
AvaII GGWCC 1 cut(s) 215
AvrII CCTAGG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 54
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 161, 284
BlnI CCTAGG 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 140, 215
BmiI GGNNCC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 142
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 283
BssNAI GTATAC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 54
BstZ17I GTATAC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 140, 215
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 115, 331
CviJI RGCY 7 cut(s) 58, 92, 135, 142, 251, 280, 345
CviKI_1 RGCY 7 cut(s) 58, 92, 135, 142, 251, 280, 345
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 118, 334
FaiI YATR 4 cut(s) 116, 148, 324, 332
FatI CATG 2 cut(s) 114, 330
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 2 cut(s) 161, 284
HaeIII GGCC 1 cut(s) 142
Hin1II CATG 2 cut(s) 118, 334
HinfI GANTC 2 cut(s) 22, 192
Hpy166II GTNNAC 2 cut(s) 78, 148
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 2 cut(s) 78, 148
HpyAV CCTTC 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 2 cut(s) 118, 334
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 2 cut(s) 156, 192
MaeI CTAG 2 cut(s) 161, 284
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 3 cut(s) 59, 199, 317
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 1 cut(s) 292
NlaIII CATG 2 cut(s) 118, 334
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 51
PfeI GAWTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 140, 215
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
Sau96I GGNCC 2 cut(s) 140, 215
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 1 cut(s) 186
SetI ASST 5 cut(s) 60, 133, 289, 347, 360
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 177
SspI AATATT 1 cut(s) 66
SspMI CTAG 2 cut(s) 161, 284
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 96, 131, 249, 339
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 215
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 161, 284
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.