Rroxscaffold_1G00044210

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001337
Physical Location & Seq
Reverse (-)
62981346 .. 62995744
14399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044210.1

Sequence Viewer

Length: 582 bp
ATGAATCTCAAGGAGTGCAGGGCCAAATGCTTGTCTAATTGTTCTTGTTCCGCGTACACAAACTTGGATGTCGGGGGTGGAGAGTCATCCTACACTTCACAATCACCACAAATTTCCAAGTGTAGGGACGGTACTCAAAACAACATTGAAGAGCAGAAGGATGAAAACCTGGAGCTGCCATTTTTCGACTTGTCAACAATAGAGACTGCTACCAATAAATTCTCAATCAATAAAAAACTTGGAGAAGGTGGTTTTGGACCTGTGTACAAGGTAATATGTAATCTGGTAACAGAAGAATCAAACAAGTTTAGCATCTGTTTTGAGAAAATAACAACTAATCTTCATGCAAATGTGAATAACCTTCAGGGTACACTAATAGATGGAAAAGAAATTGCAGTGAAGCAGCTCTCAAGAAGTTCTAGACAAGGAATGAAAGAGTTCAAAATGAAGGGGCTTCTCTATCTTCATCAGGACATACACAGAGATCTAAAAGCGCGCAATGTCTTGCTTGATCATGAGATGAACCCCAAAATCTCAGATTTTGGTCTTGCTAGAACTTTCGGTGGTGATCAAACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

6.44

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 1 - 27 5.4e-07 PAN-like domain
Pkinase PF00069 146 - 190 3e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 150 - 187 1.5e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 496
AciI CCGC 1 cut(s) 51
AcsI RAATTY 2 cut(s) 111, 218
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 4 cut(s) 56, 133, 266, 370
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 149, 442
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 175, 406
AluI AGCT 2 cut(s) 175, 406
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 175, 403
ApoI RAATTY 2 cut(s) 111, 218
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 496, 498
AspS9I GGNCC 2 cut(s) 21, 257
AsuHPI GGTGA 2 cut(s) 96, 578
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 162, 415
BccI CCATC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 2 cut(s) 511, 568
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 420, 552
BglII AGATCT 1 cut(s) 484
BisI GCNGC 2 cut(s) 176, 404
BlsI GCNGC 2 cut(s) 177, 405
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 21, 257
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 170
BseGI GGATG 3 cut(s) 73, 86, 166
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 549
BsePI GCGCGC 1 cut(s) 494
BseXI GCAGC 2 cut(s) 162, 415
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 53, 496
BshFI GGCC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 3 cut(s) 484, 511, 568
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 548
BspFNI CGCG 2 cut(s) 53, 496
BspHI TCATGA 1 cut(s) 514
BspQI GCTCTTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 505
BsrGI TGTACA 1 cut(s) 264
BssHII GCGCGC 1 cut(s) 494
BssMI GATC 3 cut(s) 484, 511, 568
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 1 cut(s) 535
BstF5I GGATG 3 cut(s) 73, 86, 166
BstFNI CGCG 2 cut(s) 53, 496
BstHHI GCGC 2 cut(s) 496, 498
BstKTI GATC 3 cut(s) 487, 514, 571
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 484, 511, 568
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 2 cut(s) 53, 496
BstV1I GCAGC 2 cut(s) 162, 415
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 3 cut(s) 73, 86, 166
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 496
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 496, 498
Cfr13I GGNCC 2 cut(s) 21, 257
Csp6I GTAC 4 cut(s) 55, 132, 265, 369
CviAII CATG 2 cut(s) 344, 515
CviJI RGCY 4 cut(s) 23, 175, 406, 454
CviKI_1 RGCY 4 cut(s) 23, 175, 406, 454
CviQI GTAC 4 cut(s) 55, 132, 265, 369
DdeI CTNAG 1 cut(s) 535
DpnI GATC 3 cut(s) 486, 513, 570
DpnII GATC 3 cut(s) 484, 511, 568
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 347, 518
FaiI YATR 4 cut(s) 277, 345, 476, 516
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 343, 514
FbaI TGATCA 2 cut(s) 511, 568
Fnu4HI GCNGC 2 cut(s) 176, 404
FokI GGATG 3 cut(s) 73, 80, 173
Fsp4HI GCNGC 2 cut(s) 176, 404
FspBI CTAG 2 cut(s) 420, 552
GlaI GCGC 2 cut(s) 495, 497
GluI GCNGC 2 cut(s) 176, 404
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 23
HhaI GCGC 2 cut(s) 496, 498
Hin1II CATG 2 cut(s) 347, 518
Hin6I GCGC 2 cut(s) 494, 496
HinP1I GCGC 2 cut(s) 494, 496
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 3 cut(s) 4, 83, 296
HphI GGTGA 2 cut(s) 96, 578
Hpy166II GTNNAC 4 cut(s) 57, 195, 265, 371
Hpy188I TCNGA 1 cut(s) 538
Hpy188III TCNNGA 4 cut(s) 411, 420, 470, 515
Hpy8I GTNNAC 4 cut(s) 57, 195, 265, 371
HpyAV CCTTC 4 cut(s) 151, 239, 371, 442
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 18, 347, 395
HpyF3I CTNAG 1 cut(s) 535
Hsp92II CATG 2 cut(s) 347, 518
HspAI GCGC 2 cut(s) 494, 496
Ksp22I TGATCA 2 cut(s) 511, 568
Kzo9I GATC 3 cut(s) 484, 511, 568
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 4, 155, 182, 269, 273, 350, 455
Lsp1109I GCAGC 2 cut(s) 162, 415
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 420, 552
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 486, 513, 570
MboI GATC 3 cut(s) 484, 511, 568
MboII GAAGA 4 cut(s) 161, 305, 332, 455
MflI RGATCY 1 cut(s) 484
MluCI AATT 4 cut(s) 37, 111, 218, 390
MlyI GAGTC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 53, 496
NdeII GATC 3 cut(s) 484, 511, 568
NlaIII CATG 2 cut(s) 347, 518
PagI TCATGA 1 cut(s) 514
PauI GCGCGC 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 4, 296
PkrI GCNGC 2 cut(s) 177, 405
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 2 cut(s) 21, 257
PsuI RGATCY 1 cut(s) 484
PteI GCGCGC 1 cut(s) 494
RsaI GTAC 4 cut(s) 56, 133, 266, 370
RsaNI GTAC 4 cut(s) 55, 132, 265, 369
RseI CAYNNNNRTG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 144
SatI GCNGC 2 cut(s) 176, 404
Sau3AI GATC 3 cut(s) 484, 511, 568
Sau96I GGNCC 2 cut(s) 21, 257
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 170
SetI ASST 7 cut(s) 171, 177, 250, 262, 273, 363, 408
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 8, 409
SmoI CTYRAG 2 cut(s) 8, 409
Sse9I AATT 4 cut(s) 37, 111, 218, 390
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 420, 552
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 37, 111, 218, 390
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 4, 296
TscAI CASTG 1 cut(s) 402
TseI GCWGC 2 cut(s) 175, 403
TspDTI ATGAA 7 cut(s) 17, 177, 332, 446, 455, 461, 536
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 111, 218
XbaI TCTAGA 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 2 cut(s) 420, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.