RchiOBHm_Chr7g0196231

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001337
Physical Location & Seq
Forward (+)
14233566 .. 14234056
491 bp
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UTR
Exon/CDS
Intron
PRQ17550

Sequence Viewer

Length: 378 bp
ATGGATTACTGTGAAGAAGAAAGGGAAGACATGGAGTTGCTGCTATTTGACTTCACCACTATTGCTGATGCCACTGATAACTTTTCAAGCAACAACAAACTGGGACAAGGTGGTTTTGGACCTGTGTACAAGAGGCGATCCAAGGAATCTGGTCAAGGAATGAGGGAGTTCAAAAATGAAGTTATACTGATAGCCAAACTTCAGCACCGTAATCTTGTGAAGCTTTTGGGCTGTTGCATTCAAAATGATGAAAAAATGTTAATATATGAATACACGTCCAACAGGATCGAGCTTGGACTTCTTTATATTTGGTATGATCCTTTCCAAGCTCAACTACATGGATTTACAGTCATATCATCCTCCATTGGTTTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

125

Amino Acids

14.45

Weight (kDa)

4.99

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 48 - 93 1.4e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 132, 293, 311
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 87, 172, 242
AjiI CACGTC 1 cut(s) 276
AluBI AGCT 3 cut(s) 223, 292, 329
AluI AGCT 3 cut(s) 223, 292, 329
AlwI GGATC 3 cut(s) 132, 293, 311
ApeKI GCWGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 27
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 237
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 137, 285, 316
BspPI GGATC 3 cut(s) 132, 293, 311
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 137, 285, 316
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 11, 209, 349
BstAUI TGTACA 1 cut(s) 126
BstF5I GGATG 1 cut(s) 356
BstKTI GATC 3 cut(s) 140, 288, 319
BstMBI GATC 3 cut(s) 137, 285, 316
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 33
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 31, 338
CviJI RGCY 5 cut(s) 194, 223, 231, 292, 329
CviKI_1 RGCY 5 cut(s) 194, 223, 231, 292, 329
CviQI GTAC 1 cut(s) 127
DpnI GATC 3 cut(s) 139, 287, 318
DpnII GATC 3 cut(s) 137, 285, 316
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 34, 341
FaiI YATR 8 cut(s) 32, 185, 265, 267, 306, 315, 339, 353
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 30, 337
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 34, 341
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 11, 209, 349
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 2 cut(s) 34, 341
Kzo9I GATC 3 cut(s) 137, 285, 316
LpnPI CCDG 4 cut(s) 86, 135, 135, 268
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 275
MalI GATC 3 cut(s) 139, 287, 318
MboI GATC 3 cut(s) 137, 285, 316
MboII GAAGA 3 cut(s) 26, 29, 38
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 3 cut(s) 126, 156, 370
MseI TTAA 2 cut(s) 260, 376
Mva1269I GAATGC 1 cut(s) 237
NdeII GATC 3 cut(s) 137, 285, 316
NlaIII CATG 2 cut(s) 34, 341
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 119
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 260, 376
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 137, 285, 316
Sau96I GGNCC 1 cut(s) 119
SetI ASST 6 cut(s) 112, 124, 225, 278, 294, 331
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 119
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 11, 209, 349
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 288
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 260, 376
Tru9I TTAA 2 cut(s) 260, 376
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 192, 264, 282
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.