Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Forward (+)

2818481 .. 2820354

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCCGCTGCTGGGACAAACTCTGAAGAGCTTGGTGGGACCTGCTGCTAGTGCACCTTCAGGGGATAATGAAATTACTGATGTGGAGTCGTTGCAGTTTGATTTTGCTACAATTGAAGCAGCCACAAACCAGTTCTCTGTTAATAATAGATTAGGGGAAGGTGGTTTTGGAGAGGTTTACAAGGGACTCATGAAAAAAATTCTAGGCTTGGAAACATTGGAGGGATGGGACGCCAGAAGAGTTGTTGGATTCAAATCTGAGAGGTTCTTATTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

5.38

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	42, 44
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	116, 253, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	7, 44, 119
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	31, 131
BccI	CCATC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	48, 203
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	4 cut(s)	5, 8, 45, 120
BlsI	GCNGC	4 cut(s)	6, 9, 46, 121
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	253
BseGI	GGATG	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	31, 131
BseYI	CCCAGC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	55
BslFI	GGGAC	4 cut(s)	27, 51, 198, 242
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmFI	GGGAC	4 cut(s)	27, 51, 198, 242
Bsp1286I	GDGCHC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	231
Bst6I	CTCTTC	2 cut(s)	20, 232
BstACI	GRCGYC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	31, 131
BtsCI	GGATG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	239
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	3 cut(s)	30, 122, 207
CviKI_1	RGCY	3 cut(s)	30, 122, 207
DdeI	CTNAG	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	20, 232
EarI	CTCTTC	2 cut(s)	20, 232
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	42, 44
EcoO109I	RGGNCCY	1 cut(s)	38
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FaqI	GGGAC	4 cut(s)	27, 51, 198, 242
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	5, 8, 45, 120
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	5, 8, 45, 120
FspBI	CTAG	2 cut(s)	48, 203
GluI	GCNGC	4 cut(s)	5, 8, 45, 120
GsaI	CCCAGC	1 cut(s)	14
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	3 cut(s)	86, 186, 249
Hpy166II	GTNNAC	2 cut(s)	53, 178
Hpy188I	TCNGA	2 cut(s)	24, 259
Hpy188III	TCNNGA	2 cut(s)	190, 274
Hpy8I	GTNNAC	2 cut(s)	53, 178
HpyAV	CCTTC	2 cut(s)	66, 152
HpyCH4V	TGCA	2 cut(s)	53, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	45, 54, 143, 247
Lsp1109I	GCAGC	2 cut(s)	31, 131
MaeI	CTAG	2 cut(s)	48, 203
MboII	GAAGA	2 cut(s)	37, 249
MfeI	CAATTG	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	3 cut(s)	72, 111, 198
MlyI	GAGTC	2 cut(s)	95, 180
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	166, 214, 255
MseI	TTAA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	39
PagI	TCATGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	6, 9, 46, 121
PleI	GAGTC	2 cut(s)	94, 180
PpsI	GAGTC	2 cut(s)	94, 180
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PspPPI	RGGWCCY	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	4 cut(s)	5, 8, 45, 120
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	95, 180
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	6 cut(s)	32, 43, 58, 163, 177, 266
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	3 cut(s)	72, 111, 198
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	48, 203
TasI	AATT	3 cut(s)	72, 111, 198
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	3 cut(s)	7, 44, 119
TspDTI	ATGAA	2 cut(s)	84, 206
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	2 cut(s)	48, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.