Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Forward (+)

11274860 .. 11294885

Gene Structure 20026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATCAAGAGACGAGATCAAATAGGTCAGCCACAGCTTGATAGTGAAAGACAAGTAAAAAATTTGATAGACACAAGTGAGTTCAAGGAAGAAGATGGGAAAGGTATAGATATACCTTTTCTTGATTTGCAAAGCATACCGGACGCTACGGATAACTTCTCGGATGCTAATAAACTTGGACAAGGGGGGTATGGACCTGTTTACAAGAGGCTAAAGGAAACATATTTCTCTATTTGGGAATTGGAAGCATCAAAACGCAAAGCAAAGCCACCAAATGACGTGAAACGAAGCTTCACCGACGCGTCTCCTCCTCCTCATCACGCCGGTGGTCGTCGGTCGTCACGCCGTGGCCGGAAAAGAAAGAACAGAGGCCGTGAAGTTACTGTAGCAGCTCGAGTTTTTTTGAAAAATTTTCCAGATTCCGGCCAACCCAGGCGGAGTTTCTTGGCCTATTTTGCAAGCCTTGAGCTTGGAAGCCGCTCTTGCTTCGGTGGTTGGGAGCAAAACCTTGGTCTCTCTCGATTTCTCTCTTCTCTGCAACTTTTCTCGTTCTCTCCACTCGTGCCACCAAATGACGTGAAACGAAGCTTCACCGACGCGTCTCCTCCTCCTCATCACGCCGGTGGTCGTCGGTCGTCACGCCGTGGCCGGAAAAGAAAGAACAGAGGCCGTGAAGTTACTGTAGCAGCTCGAGTTTTTTTGAAAAATTTTCCAGATTCCGGCCAACCCGGCGGAGTTTCTTGGCCTATTTTGCAAGCCTTGAGCTGTAAACCACATCCCTCAAAGCTTTCTTCCGAAAAACACAAAGAAAATGACGGATCGAAGGTTTTGGGCTGGGGATTAAGAAGGAATGGAGCGGGATTGAGAAGGATCCGGATGACGAAGGAGTTGAAATTCGGATTTTGGTGTTTGGGGTCCGGGTTTTCGAGAGTTAGGAGAGAGAGAAGAGAGAATAAGAAGGCGGAGTCTAAAATTGAGAAAGAAATAGATCGAGTAAATGTACAACCGGCATATGGCGTTTACTACAAAAACGTCATTGCTTTCTCATTCATGGTGTTTGGTAAACGTCATAAACTTAATGGCGTTCATACAAAACGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin GUB_WAK_bind PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

367

Amino Acids

41.71

Weight (kDa)

10.68

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	480, 857
AccII	CGCG	2 cut(s)	302, 599
AccIII	TCCGGA	1 cut(s)	873
AciI	CCGC	5 cut(s)	436, 478, 732, 857, 962
AclWI	GGATC	3 cut(s)	826, 865, 878
AcoI	YGGCCR	4 cut(s)	349, 424, 646, 721
AcsI	RAATTY	4 cut(s)	61, 409, 706, 893
AdeI	CACNNNGTG	2 cut(s)	347, 644
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	3 cut(s)	422, 719, 1013
AflIII	ACRYGT	2 cut(s)	300, 597
AgsI	TTSAA	4 cut(s)	85, 406, 703, 892
AjiI	CACGTC	2 cut(s)	280, 577
AjnI	CCWGG	1 cut(s)	431
AleI	CACNNNNGTG	2 cut(s)	324, 621
AluBI	AGCT	8 cut(s)	37, 291, 392, 469, 588, 689, 765, 787
AluI	AGCT	8 cut(s)	37, 291, 392, 469, 588, 689, 765, 787
Alw26I	GTCTC	4 cut(s)	4, 309, 518, 606
AlwI	GGATC	3 cut(s)	826, 865, 878
Ama87I	CYCGRG	2 cut(s)	393, 690
Aor13HI	TCCGGA	1 cut(s)	873
AoxI	GGCC	8 cut(s)	349, 370, 424, 447, 646, 667, 721, 743
ApeKI	GCWGC	2 cut(s)	389, 686
ApoI	RAATTY	4 cut(s)	61, 409, 706, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
AspS9I	GGNCC	2 cut(s)	194, 915
AsuC2I	CCSGG	2 cut(s)	729, 919
AsuHPI	GGTGA	2 cut(s)	286, 583
AvaI	CYCGRG	2 cut(s)	393, 690
AvaII	GGWCC	2 cut(s)	194, 915
BamHI	GGATCC	1 cut(s)	870
BauI	CACGAG	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	401, 698
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	4 cut(s)	330, 357, 627, 654
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	729, 919
BcoDI	GTCTC	4 cut(s)	4, 309, 518, 606
BfmI	CTRYAG	2 cut(s)	384, 681
BglI	GCCNNNNNGGC	1 cut(s)	729
BisI	GCNGC	3 cut(s)	390, 478, 687
BlsI	GCNGC	3 cut(s)	391, 479, 688
Bme1390I	CCNGG	3 cut(s)	433, 729, 919
Bme18I	GGWCC	2 cut(s)	194, 915
BmeT110I	CYCGRG	2 cut(s)	393, 690
BmgBI	CACGTC	2 cut(s)	280, 577
BmgT120I	GGNCC	2 cut(s)	194, 915
BmiI	GGNNCC	2 cut(s)	872, 916
BmrFI	CCNGG	3 cut(s)	433, 729, 919
BmsI	GCATC	2 cut(s)	154, 257
BpuEI	CTTGAG	2 cut(s)	485, 781
BpuMI	CCSGG	2 cut(s)	729, 919
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	346, 431, 508, 643
BsaWI	WCCGGW	2 cut(s)	139, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 719, 1013
Bse118I	RCCGGY	3 cut(s)	323, 620, 1006
Bse3DI	GCAATG	1 cut(s)	1035
BseAI	TCCGGA	1 cut(s)	873
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	4 cut(s)	346, 431, 508, 643
BseGI	GGATG	3 cut(s)	169, 775, 882
BseLI	CCNNNNNNNGG	3 cut(s)	422, 719, 1013
BseMI	GCAATG	1 cut(s)	1035
BseRI	GAGGAG	6 cut(s)	297, 300, 303, 594, 597, 600
BseXI	GCAGC	2 cut(s)	401, 698
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	2 cut(s)	302, 599
Bsh1285I	CGRYCG	2 cut(s)	338, 635
BshFI	GGCC	8 cut(s)	351, 372, 426, 449, 648, 669, 723, 745
BsiEI	CGRYCG	2 cut(s)	338, 635
BsiHKCI	CYCGRG	2 cut(s)	393, 690
BslI	CCNNNNNNNGG	3 cut(s)	422, 719, 1013
BsmAI	GTCTC	4 cut(s)	4, 309, 518, 606
BsmBI	CGTCTC	3 cut(s)	4, 309, 606
BsnI	GGCC	8 cut(s)	351, 372, 426, 449, 648, 669, 723, 745
Bso31I	GGTCTC	1 cut(s)	518
BsoBI	CYCGRG	2 cut(s)	393, 690
Bsp13I	TCCGGA	1 cut(s)	873
Bsp1407I	TGTACA	1 cut(s)	1000
Bsp143I	GATC	5 cut(s)	3, 16, 818, 870, 988
BspACI	CCGC	5 cut(s)	436, 478, 732, 857, 962
BspANI	GGCC	8 cut(s)	351, 372, 426, 449, 648, 669, 723, 745
BspEI	TCCGGA	1 cut(s)	873
BspFNI	CGCG	2 cut(s)	302, 599
BspLI	GGNNCC	2 cut(s)	872, 916
BspPI	GGATC	3 cut(s)	826, 865, 878
BspTNI	GGTCTC	1 cut(s)	518
BsrBI	CCGCTC	2 cut(s)	480, 857
BsrDI	GCAATG	1 cut(s)	1035
BsrFI	RCCGGY	3 cut(s)	323, 620, 1006
BsrGI	TGTACA	1 cut(s)	1000
BssAI	RCCGGY	3 cut(s)	323, 620, 1006
BssECI	CCNNGG	4 cut(s)	346, 431, 508, 643
BssMI	GATC	5 cut(s)	3, 16, 818, 870, 988
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	508
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	385, 682
Bst6I	CTCTTC	2 cut(s)	535, 940
BstAUI	TGTACA	1 cut(s)	1000
BstC8I	GCNNGC	2 cut(s)	460, 756
BstDSI	CCRYGG	2 cut(s)	346, 643
BstF5I	GGATG	3 cut(s)	169, 775, 882
BstFNI	CGCG	2 cut(s)	302, 599
BstKTI	GATC	5 cut(s)	6, 19, 821, 873, 991
BstMAI	GTCTC	4 cut(s)	4, 309, 518, 606
BstMBI	GATC	5 cut(s)	3, 16, 818, 870, 988
BstMCI	CGRYCG	2 cut(s)	338, 635
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 483, 729, 751
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	3 cut(s)	431, 727, 917
BstSFI	CTRYAG	2 cut(s)	384, 681
BstUI	CGCG	2 cut(s)	302, 599
BstV1I	GCAGC	2 cut(s)	401, 698
BstX2I	RGATCY	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	870
BsuRI	GGCC	8 cut(s)	351, 372, 426, 449, 648, 669, 723, 745
BtgI	CCRYGG	2 cut(s)	346, 643
BtrI	CACGTC	2 cut(s)	280, 577
BtsCI	GGATG	3 cut(s)	169, 775, 882
Cac8I	GCNNGC	2 cut(s)	460, 756
Cfr10I	RCCGGY	3 cut(s)	323, 620, 1006
Cfr13I	GGNCC	2 cut(s)	194, 915
CseI	GACGC	5 cut(s)	152, 291, 308, 588, 605
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	1 cut(s)	1051
CviQI	GTAC	1 cut(s)	1001
DpnI	GATC	5 cut(s)	5, 18, 820, 872, 990
DpnII	GATC	5 cut(s)	3, 16, 818, 870, 988
DraIII	CACNNNGTG	2 cut(s)	347, 644
EaeI	YGGCCR	4 cut(s)	349, 424, 646, 721
Eam1104I	CTCTTC	2 cut(s)	535, 940
EarI	CTCTTC	2 cut(s)	535, 940
EciI	GGCGGA	3 cut(s)	451, 747, 977
Eco130I	CCWWGG	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	194, 915
Eco88I	CYCGRG	2 cut(s)	393, 690
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
Esp3I	CGTCTC	3 cut(s)	4, 309, 606
FaeI	CATG	1 cut(s)	1054
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FatI	CATG	1 cut(s)	1050
FauI	CCCGC	1 cut(s)	850
FauNDI	CATATG	1 cut(s)	1012
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	390, 478, 687
FokI	GGATG	3 cut(s)	176, 762, 889
Fsp4HI	GCNGC	3 cut(s)	390, 478, 687
GluI	GCNGC	3 cut(s)	390, 478, 687
GsaI	CCCAGC	1 cut(s)	838
HaeIII	GGCC	8 cut(s)	351, 372, 426, 449, 648, 669, 723, 745
HgaI	GACGC	5 cut(s)	152, 291, 308, 588, 605
Hin1II	CATG	1 cut(s)	1054
HindIII	AAGCTT	3 cut(s)	289, 586, 785
HinfI	GANTC	3 cut(s)	419, 716, 965
HphI	GGTGA	2 cut(s)	286, 583
Hpy166II	GTNNAC	4 cut(s)	202, 770, 1021, 1064
Hpy188I	TCNGA	3 cut(s)	163, 796, 899
Hpy188III	TCNNGA	7 cut(s)	7, 122, 416, 519, 713, 874, 927
Hpy8I	GTNNAC	4 cut(s)	202, 770, 1021, 1064
Hpy99I	CGWCG	4 cut(s)	302, 336, 599, 633
HpyAV	CCTTC	5 cut(s)	817, 840, 861, 877, 952
HpyCH4III	ACNGT	2 cut(s)	385, 682
HpyCH4IV	ACGT	5 cut(s)	279, 576, 1032, 1066, 1096
HpyCH4V	TGCA	4 cut(s)	130, 458, 538, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 483, 729, 751
HpySE526I	ACGT	5 cut(s)	279, 576, 1032, 1066, 1096
Hsp92II	CATG	1 cut(s)	1054
Kpn2I	TCCGGA	1 cut(s)	873
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 16, 818, 870, 988
LmnI	GCTCC	2 cut(s)	499, 854
Lsp1109I	GCAGC	2 cut(s)	401, 698
LweI	GCATC	2 cut(s)	154, 257
MaeII	ACGT	5 cut(s)	279, 576, 1032, 1066, 1096
MaeIII	GTNAC	4 cut(s)	339, 379, 636, 676
MalI	GATC	5 cut(s)	5, 18, 820, 872, 990
MbiI	CCGCTC	2 cut(s)	480, 857
MboI	GATC	5 cut(s)	3, 16, 818, 870, 988
MboII	GAAGA	5 cut(s)	101, 104, 522, 783, 957
MflI	RGATCY	1 cut(s)	870
MluCI	AATT	6 cut(s)	61, 239, 409, 706, 893, 972
MluI	ACGCGT	2 cut(s)	300, 597
MlyI	GAGTC	1 cut(s)	974
MroI	TCCGGA	1 cut(s)	873
MseI	TTAA	2 cut(s)	842, 1077
MslI	CAYNNNNRTG	2 cut(s)	324, 621
MspR9I	CCNGG	3 cut(s)	433, 729, 919
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	2 cut(s)	302, 599
MwoI	GCNNNNNNNGC	4 cut(s)	455, 483, 729, 751
NciI	CCSGG	2 cut(s)	729, 919
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	5 cut(s)	3, 16, 818, 870, 988
NlaIII	CATG	1 cut(s)	1054
NlaIV	GGNNCC	2 cut(s)	872, 916
NmuCI	GTSAC	2 cut(s)	339, 636
OliI	CACNNNNGTG	2 cut(s)	324, 621
PaeR7I	CTCGAG	2 cut(s)	393, 690
PfeI	GAWTC	2 cut(s)	419, 716
PkrI	GCNGC	3 cut(s)	391, 479, 688
PleI	GAGTC	1 cut(s)	973
PpsI	GAGTC	1 cut(s)	973
Psp6I	CCWGG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	872, 916
PspPI	GGNCC	2 cut(s)	194, 915
PspXI	VCTCGAGB	2 cut(s)	393, 690
PsuI	RGATCY	1 cut(s)	870
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	2 cut(s)	324, 621
SaqAI	TTAA	2 cut(s)	842, 1077
SatI	GCNGC	3 cut(s)	390, 478, 687
Sau3AI	GATC	5 cut(s)	3, 16, 818, 870, 988
Sau96I	GGNCC	2 cut(s)	194, 915
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	3 cut(s)	433, 729, 919
SfaNI	GCATC	2 cut(s)	154, 257
SfcI	CTRYAG	2 cut(s)	384, 681
Sfr274I	CTCGAG	2 cut(s)	393, 690
SgrAI	CRCCGGYG	2 cut(s)	323, 620
SinI	GGWCC	2 cut(s)	194, 915
SlaI	CTCGAG	2 cut(s)	393, 690
SmiMI	CAYNNNNRTG	2 cut(s)	324, 621
SmlI	CTYRAG	4 cut(s)	393, 464, 690, 760
SmoI	CTYRAG	4 cut(s)	393, 464, 690, 760
Sse9I	AATT	6 cut(s)	61, 239, 409, 706, 893, 972
SsiI	CCGC	5 cut(s)	436, 478, 732, 857, 962
StyD4I	CCNGG	3 cut(s)	431, 727, 917
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	385, 682
TaiI	ACGT	5 cut(s)	282, 579, 1035, 1069, 1099
TaqI	TCGA	6 cut(s)	394, 520, 691, 821, 926, 991
TaqII	GACCGA	2 cut(s)	324, 621
TasI	AATT	6 cut(s)	61, 239, 409, 706, 893, 972
TatI	WGTACW	1 cut(s)	1000
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	2 cut(s)	419, 716
Tru1I	TTAA	2 cut(s)	842, 1077
Tru9I	TTAA	2 cut(s)	842, 1077
TseFI	GTSAC	2 cut(s)	339, 636
TseI	GCWGC	2 cut(s)	389, 686
Tsp45I	GTSAC	2 cut(s)	339, 636
TspDTI	ATGAA	2 cut(s)	1039, 1076
TspGWI	ACGGA	2 cut(s)	164, 831
VpaK11BI	GGWCC	2 cut(s)	194, 915
XapI	RAATTY	4 cut(s)	61, 409, 706, 893
XhoI	CTCGAG	2 cut(s)	393, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.