Rroxscaffold_2G00138080

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001337
Physical Location & Seq
Forward (+)
76118589 .. 76122931
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138080.1

Sequence Viewer

Length: 498 bp
ATGAAGGAGGTCAGATCACGGCTAGAAGATGCAGAAGATGTCGTTCTCCCCTCTCTCTTGTGCGGCAGAACGTACGTCTCGAGTAGACGTCCCTTCTTTTATTGCTTAGGTACTCAAAACAACATTGAAGAGCAGAAGGATGAAGACCTGGAGCTACCATTGTTCGACTTGTCAACAATAGAGACTGCTACCAATAAATTTTCAATTAATAATAAACTTGGAGAAGGTGGTTTTGGATCTGTGTACGAGGTAATATGTACTCTGCTAACAGAAGAATCATGCAAGTTAAGCATCTATGTTGAGAAAACAACAACTAATCTTAATGCAAATGTGAATAATCTTCAGGGTACACTACTAGATGGAAAAGAAATTGCAGTGAAGCGGCTGTCAAGAAGTTCGGGACAAGGAATGAAAGAGTTCAAAAATGAAGTGATACTGATTGCAAAACTTCAGCACCGCAATCTTGTAAAGCTTCTTCACAAGGACACAAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

165

Amino Acids

18.56

Weight (kDa)

5.78

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 85
AciI CCGC 3 cut(s) 63, 382, 457
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 326, 434
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 5 cut(s) 74, 112, 245, 259, 349
AgsI TTSAA 3 cut(s) 128, 204, 421
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 2 cut(s) 154, 472
AluI AGCT 2 cut(s) 154, 472
Alw26I GTCTC 2 cut(s) 82, 176
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 79
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 82, 176
BfaI CTAG 2 cut(s) 23, 356
BisI GCNGC 2 cut(s) 64, 383
BlsI GCNGC 2 cut(s) 65, 384
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 19, 300
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 79
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 75, 414
BsmAI GTCTC 2 cut(s) 82, 176
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 75, 414
BsoBI CYCGRG 1 cut(s) 79
Bsp143I GATC 2 cut(s) 14, 236
BspACI CCGC 3 cut(s) 63, 382, 457
BspPI GGATC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 123
BssMI GATC 2 cut(s) 14, 236
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 17, 239
BstMAI GTCTC 2 cut(s) 82, 176
BstMBI GATC 2 cut(s) 14, 236
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Csp6I GTAC 5 cut(s) 73, 111, 244, 258, 348
CviAII CATG 1 cut(s) 279
CviJI RGCY 4 cut(s) 22, 154, 385, 472
CviKI_1 RGCY 4 cut(s) 22, 154, 385, 472
CviQI GTAC 5 cut(s) 73, 111, 244, 258, 348
DdeI CTNAG 1 cut(s) 106
DpnI GATC 2 cut(s) 16, 238
DpnII GATC 2 cut(s) 14, 236
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 326, 434
Eco88I CYCGRG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 1 cut(s) 282
FaiI YATR 4 cut(s) 256, 280, 297, 496
FaqI GGGAC 2 cut(s) 75, 414
FatI CATG 1 cut(s) 278
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 64, 383
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 64, 383
FspBI CTAG 2 cut(s) 23, 356
GluI GCNGC 2 cut(s) 64, 383
GsuI CTGGAG 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 1 cut(s) 282
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 86, 174, 244, 350
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 79, 390, 399
Hpy8I GTNNAC 4 cut(s) 86, 174, 244, 350
HpyAV CCTTC 3 cut(s) 103, 130, 218
HpyCH4IV ACGT 3 cut(s) 71, 75, 88
HpyCH4V TGCA 6 cut(s) 32, 282, 326, 374, 443, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 3 cut(s) 71, 75, 88
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 2 cut(s) 14, 236
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 134, 161, 329
LweI GCATC 2 cut(s) 19, 300
MaeI CTAG 2 cut(s) 23, 356
MaeII ACGT 3 cut(s) 71, 75, 88
MalI GATC 2 cut(s) 16, 238
MboI GATC 2 cut(s) 14, 236
MboII GAAGA 7 cut(s) 38, 47, 140, 155, 284, 332, 467
MflI RGATCY 1 cut(s) 236
MluCI AATT 3 cut(s) 197, 204, 369
MnlI CCTC 2 cut(s) 61, 241
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 3 cut(s) 207, 287, 321
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 2 cut(s) 14, 236
NlaIII CATG 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 275
Pfl23II CGTACG 1 cut(s) 72
PkrI GCNGC 2 cut(s) 65, 384
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspLI CGTACG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 5 cut(s) 74, 112, 245, 259, 349
RsaNI GTAC 5 cut(s) 73, 111, 244, 258, 348
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 207, 287, 321
SatI GCNGC 2 cut(s) 64, 383
Sau3AI GATC 2 cut(s) 14, 236
ScrFI CCNGG 1 cut(s) 149
SfaNI GCATC 2 cut(s) 19, 300
Sfr274I CTCGAG 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 3 cut(s) 197, 204, 369
SsiI CCGC 3 cut(s) 63, 382, 457
SspMI CTAG 2 cut(s) 23, 356
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 3 cut(s) 74, 78, 91
TaqI TCGA 2 cut(s) 80, 165
TasI AATT 3 cut(s) 197, 204, 369
TatI WGTACW 1 cut(s) 257
TauI GCSGC 2 cut(s) 66, 385
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 207, 287, 321
Tru9I TTAA 3 cut(s) 207, 287, 321
TscAI CASTG 1 cut(s) 381
TspDTI ATGAA 4 cut(s) 17, 156, 425, 441
TspRI CASTG 1 cut(s) 381
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 23, 356
ZraI GACGTC 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.