Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Forward (+)

99540 .. 99947

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggatcactgtgaagaagaaagggaagacatggagttgccgctatttgacttcaccactattgctgatgccactgataacttttcaagcaacaacaaagtgggacaaggtggttttggacctgtaatggattactgtgaagaagaaagggaagacatggagttgccgctatttgacttcaccactattgctgatgccactgataacttttcaagcaacaataaactgggacaaggcggttttggacctgtgtacaaggtaatgcaattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

4.05

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	41, 167, 237
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	87, 213
AlwI	GGATC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	119, 245
AsuHPI	GGTGA	2 cut(s)	46, 172
AvaII	GGWCC	2 cut(s)	119, 245
BbsI	GAAGAC	2 cut(s)	33, 159
BisI	GCNGC	2 cut(s)	41, 167
BlsI	GCNGC	2 cut(s)	42, 168
Bme18I	GGWCC	2 cut(s)	119, 245
BmgT120I	GGNCC	2 cut(s)	119, 245
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	58, 184
BmuI	ACTGGG	1 cut(s)	236
BpiI	GAAGAC	2 cut(s)	33, 159
Bse1I	ACTGG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	117, 243
BsmFI	GGGAC	2 cut(s)	117, 243
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	41, 167, 237
BspPI	GGATC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	2 cut(s)	11, 137
BstAUI	TGTACA	1 cut(s)	252
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstV2I	GAAGAC	2 cut(s)	33, 159
BtsIMutI	CAGTG	3 cut(s)	7, 72, 198
Cfr13I	GGNCC	2 cut(s)	119, 245
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	31, 157
CviQI	GTAC	1 cut(s)	253
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco47I	GGWCC	2 cut(s)	119, 245
FaeI	CATG	2 cut(s)	34, 160
FaiI	YATR	2 cut(s)	32, 158
FaqI	GGGAC	2 cut(s)	117, 243
FatI	CATG	2 cut(s)	30, 156
Fnu4HI	GCNGC	2 cut(s)	41, 167
Fsp4HI	GCNGC	2 cut(s)	41, 167
GluI	GCNGC	2 cut(s)	41, 167
Hin1II	CATG	2 cut(s)	34, 160
HphI	GGTGA	2 cut(s)	46, 172
Hpy166II	GTNNAC	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	11, 137
HpyCH4V	TGCA	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	34, 160
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	135, 212, 261
LweI	GCATC	2 cut(s)	58, 184
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	26, 29, 38, 152, 155, 164
MfeI	CAATTG	1 cut(s)	266
MluCI	AATT	1 cut(s)	266
MunI	CAATTG	1 cut(s)	266
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	34, 160
PkrI	GCNGC	2 cut(s)	42, 168
PspPI	GGNCC	2 cut(s)	119, 245
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SatI	GCNGC	2 cut(s)	41, 167
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	119, 245
SetI	ASST	4 cut(s)	112, 124, 250, 261
SfaNI	GCATC	2 cut(s)	58, 184
SinI	GGWCC	2 cut(s)	119, 245
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	41, 167, 237
TaaI	ACNGT	2 cut(s)	11, 137
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	43, 169
TscAI	CASTG	3 cut(s)	14, 79, 205
TspRI	CASTG	3 cut(s)	14, 79, 205
VpaK11BI	GGWCC	2 cut(s)	119, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.