Rroxscaffold_1G00054530

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75902934 .. 75903975
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054530.1

Sequence Viewer

Length: 381 bp
ATGGGAGATGATTTAAAAGTATTTAGCTATGAATCTGTCATGGCTGCTACAGACAATTTCTCTGGAGAAAACAAGCTCGGAGAAGGGGGCTTTGGACCTGTTTATAAGGGATCAATGCCGACAGGTCAAGAAATAGCTGTAAAGACGCTTTCAAGTGGTTCAGTGCAAGGAGAAGTAGAGTTCAAGAATGAACTGATACTCATATCTGAACTCCAACATATTAATCTTGTTCAGCTTTTTGGATATTGCATTCATGGTGAAGAGAGGATGTTGATATACGAGTATATGGCAAACAAACTTACAAAAGTCTGGACTACATTTTATTTGATTCAACCAGCCGCATATGCTTCTAGATTGGAAGAAGCGTTTCAATATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

4.72

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 23 - 98 4.8e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 23 - 105 1.6e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AciI CCGC 1 cut(s) 339
AclWI GGATC 1 cut(s) 118
AgsI TTSAA 4 cut(s) 153, 184, 332, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 27, 76, 137, 235
AluI AGCT 4 cut(s) 27, 76, 137, 235
AlwI GGATC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 44
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 31
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 45, 339
BlsI GCNGC 2 cut(s) 46, 340
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 84
BseGI GGATG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 339
BspPI GGATC 1 cut(s) 118
BssMI GATC 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 154
CviAII CATG 2 cut(s) 40, 254
CviJI RGCY 7 cut(s) 27, 44, 76, 90, 137, 235, 338
CviKI_1 RGCY 7 cut(s) 27, 44, 76, 90, 137, 235, 338
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 95
FaeI CATG 2 cut(s) 43, 257
FatI CATG 2 cut(s) 39, 253
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 45, 339
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 45, 339
FspBI CTAG 1 cut(s) 351
GluI GCNGC 2 cut(s) 45, 339
GsuI CTGGAG 1 cut(s) 84
HgaI GACGC 1 cut(s) 154
Hin1II CATG 2 cut(s) 43, 257
HinfI GANTC 2 cut(s) 32, 328
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 80, 208
Hpy188III TCNNGA 5 cut(s) 63, 128, 184, 310, 351
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 166, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 43, 257
Kzo9I GATC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 48, 108, 111, 295, 348
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 1 cut(s) 351
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 2 cut(s) 272, 371
MluCI AATT 2 cut(s) 55, 376
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 14, 222
Mva1269I GAATGC 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeI CATATG 1 cut(s) 343
NdeII GATC 1 cut(s) 110
NlaIII CATG 2 cut(s) 43, 257
PctI GAATGC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 32, 328
PkrI GCNGC 2 cut(s) 46, 340
PshBI ATTAAT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 105
PspPI GGNCC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 14, 222
SatI GCNGC 2 cut(s) 45, 339
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 95
SetI ASST 6 cut(s) 29, 78, 100, 127, 139, 237
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 95
Sse9I AATT 2 cut(s) 55, 376
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 351
TasI AATT 2 cut(s) 55, 376
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 2 cut(s) 32, 328
Tru1I TTAA 2 cut(s) 14, 222
Tru9I TTAA 2 cut(s) 14, 222
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 45, 204, 242
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 95
VspI ATTAAT 1 cut(s) 222
XbaI TCTAGA 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.