Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Forward (+)

19331568 .. 19332330

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTGATAAATGAGTACATGCCAAACAAAAGTTTGGACTACTTTTTATTTCATTCAACCAGAGCGCTGGTGCTAGATTGGAAGACGCGATTCAGTATAATAGAAGGAATCACTCAAGGAGTGCTGTACTTGCACAAGTACTCAAGAATGCAAGTGATTCATAGAGATTTGAAAGCTAGTAACATTCTACTTGATGAAAATATGAATCCTAAAATTTCTGATTTTGGTATGGCAAGAATCTTTACTCATAATGAACGGGAAGCAAAGACTAAGACAAAGAGGATTGTCGAGACATATGGTTACATGTCACCGGAGTATGTTATGGGGGAAATTTTTTACATAAAATCCGATCTGTATAGTTTTGGAGTACTAATGCTTGAGATCATAAGTGGTAGGAGAAACACAAGCTTCTACGATGATGATCGTGTGGTCAATACAGTGGGATATGTATGTGCATATATTAAGCAGATCTCTCTTAGTTTTAGTTTCCTGATGATCATAGTGTTCTTGCTGGATCTGCAGGCATGGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

178

Amino Acids

20.98

Weight (kDa)

6.91

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 146	6.3e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 136	1e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	88
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	213, 330
AfaI	GTAC	4 cut(s)	17, 128, 140, 369
AfeI	AGCGCT	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	57, 172
AluBI	AGCT	2 cut(s)	176, 408
AluI	AGCT	2 cut(s)	176, 408
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	522
Aor51HI	AGCGCT	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	213, 330
AspLEI	GCGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	74, 177
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	68
BglII	AGATCT	1 cut(s)	468
BmcAI	AGTACT	2 cut(s)	140, 369
BpiI	GAAGAC	1 cut(s)	89
BpuEI	CTTGAG	3 cut(s)	99, 127, 398
BsaBI	GATNNNNATC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	420
BseJI	GATNNNNATC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	153
Bsp143I	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
BspFNI	CGCG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	1 cut(s)	522
BssMI	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
Bst4CI	ACNGT	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	270, 476
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	352, 384, 424, 471, 498, 517
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 517
BstNSI	RCATGY	2 cut(s)	22, 307
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	468, 514
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	468, 514
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	1 cut(s)	67
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	4 cut(s)	16, 127, 139, 368
CviAII	CATG	3 cut(s)	19, 304, 525
CviJI	RGCY	2 cut(s)	176, 408
CviKI_1	RGCY	2 cut(s)	176, 408
CviQI	GTAC	4 cut(s)	16, 127, 139, 368
DdeI	CTNAG	2 cut(s)	270, 476
DpnI	GATC	6 cut(s)	351, 383, 423, 470, 497, 516
DpnII	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
Eco47III	AGCGCT	1 cut(s)	66
FaeI	CATG	3 cut(s)	22, 307, 528
FatI	CATG	3 cut(s)	18, 303, 524
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	495
FspBI	CTAG	2 cut(s)	74, 177
GlaI	GCGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	68
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	22, 307, 528
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	90, 108, 157, 205, 237
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	220, 349
Hpy188III	TCNNGA	3 cut(s)	144, 289, 490
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	133, 151, 455, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 517
HpyF3I	CTNAG	2 cut(s)	270, 476
Hsp92II	CATG	3 cut(s)	22, 307, 528
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
LpnPI	CCDG	6 cut(s)	53, 73, 324, 497, 503, 506
MaeI	CTAG	2 cut(s)	74, 177
MaeIII	GTNAC	3 cut(s)	179, 299, 306
MalI	GATC	6 cut(s)	351, 383, 423, 470, 497, 516
MboI	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	2 cut(s)	468, 514
MluCI	AATT	2 cut(s)	213, 330
MnlI	CCTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	462
MspI	CCGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	153
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	130, 517
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
NlaIII	CATG	3 cut(s)	22, 307, 528
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	2 cut(s)	22, 307
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	5 cut(s)	90, 108, 157, 205, 237
PscI	ACATGT	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	468, 514
RsaI	GTAC	4 cut(s)	17, 128, 140, 369
RsaNI	GTAC	4 cut(s)	16, 127, 139, 368
SaqAI	TTAA	1 cut(s)	462
Sau3AI	GATC	6 cut(s)	349, 381, 421, 468, 495, 514
ScaI	AGTACT	2 cut(s)	140, 369
SetI	ASST	2 cut(s)	178, 410
SfcI	CTRYAG	1 cut(s)	518
SmlI	CTYRAG	3 cut(s)	114, 142, 377
SmoI	CTYRAG	3 cut(s)	114, 142, 377
Sse9I	AATT	2 cut(s)	213, 330
SspMI	CTAG	2 cut(s)	74, 177
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	213, 330
TatI	WGTACW	4 cut(s)	15, 126, 138, 367
TfiI	GAWTC	5 cut(s)	90, 108, 157, 205, 237
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	5 cut(s)	41, 149, 210, 218, 267
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	2 cut(s)	213, 330
XceI	RCATGY	2 cut(s)	22, 307
XspI	CTAG	2 cut(s)	74, 177
ZrmI	AGTACT	2 cut(s)	140, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.