pycom10g17660

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
20889893 .. 20890213
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17660.1

Sequence Viewer

Length: 321 bp
ATGATAGCTCTTGATGATTTCTTTCATCATTTGTTCAGCATAAAGTTTAAAACATTCTCACTTGACTCCCTATGTTGGACAGATTCCACCAGAGGTCAGCAACTAGATTGGACAAAGCGCTTCACAATAATTGAAGGAATCGCTCAAGGAATGCTTTACTTGCACAAATACTCGAGGAAGAAAGTGATTCATAGAGATTTGAAAGCCAGTAATATACTACTTGACGATCATATGAACCCCAAAATTTCAGATTTTGGTATGGCAAGGATTTTCACTCAGGAACTGGGAGCTAATACTAAGAGGATTGTCGGGACACAGTGA

Protein Analysis

107

Amino Acids

12.36

Weight (kDa)

9.41

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 93 2.5e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 40 - 105 4e-15 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 134, 202
AluBI AGCT 2 cut(s) 8, 290
AluI AGCT 2 cut(s) 8, 290
AlwNI CAGNNNCTG 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 172
Aor51HI AGCGCT 1 cut(s) 119
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 172
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 207, 288
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 207, 288
BsiHKCI CYCGRG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 289
BsrI ACTGG 2 cut(s) 207, 288
BssMI GATC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 276, 297
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 120
CviJI RGCY 3 cut(s) 8, 206, 290
CviKI_1 RGCY 3 cut(s) 8, 206, 290
DdeI CTNAG 2 cut(s) 276, 297
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 49
Eco47III AGCGCT 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 172
FaiI YATR 7 cut(s) 41, 73, 192, 215, 231, 233, 260
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FauNDI CATATG 1 cut(s) 231
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 121
HhaI GCGC 1 cut(s) 120
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 4 cut(s) 65, 83, 138, 187
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 11, 278, 310
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 276, 297
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 4 cut(s) 103, 220, 263, 269
MaeI CTAG 1 cut(s) 104
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 190
MluCI AATT 2 cut(s) 129, 243
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 3 cut(s) 86, 168, 294
MseI TTAA 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeI CATATG 1 cut(s) 231
NdeII GATC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 172
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 83, 138, 187
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 283
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 59
SetI ASST 3 cut(s) 10, 97, 292
Sfr274I CTCGAG 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 144, 172
SmoI CTYRAG 2 cut(s) 144, 172
Sse9I AATT 2 cut(s) 129, 243
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 129, 243
TfiI GAWTC 3 cut(s) 83, 138, 187
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 14, 179, 248
XapI RAATTY 1 cut(s) 243
XhoI CTCGAG 1 cut(s) 172
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.