Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001337

Physical Location & Seq

Genomic Coordinates Forward (+)

3495374 .. 3498624

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTTCCAGCAGAAAAATGAGAGAGCCAAAGATGAAGCTTCTTCTTCGAGCTCTGCAGCTTCTGCTTCCACTTCTAATCCTCCACTTCCGTTCCGCCACATCTGAAATCTTCTTCGAAGAGCGATTCGAAGATGGGTGGAAAAGCCGCTGGGTCTTATCAGACTGGAAAAGGGCAGAAGGAAAAGCAGGAACGTTCAAGTACACTGCAGGGAAATGGCCTGGGGATCCTGATGATAAAGGCATTCAAACATATAATGATGCCAAGCATTTTGCCATATCTGCTAAAGTACCTGAGTTCAGCAACAAAAATAGAACTCTAGTTGTCCAGTATTCGATTAAATTTGAGCAAGACATAGAATGTGGTGGTGGTTACATCAAGCTTCTCTCTAGCTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCGTACAGACTTAACAGAATACATCAAGACCATGGTTCTGACTTCACGTTATTTTTTCTGCAGTTTCATGTTTGGACCAGATTTATGTGGCACACAGACAAAAAAACTCCATGTTATACTTTCCTACCAGGGGCAGAATTATCCCCTAAAAAAGGATCTCCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

198

Amino Acids

22.97

Weight (kDa)

9.58

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15100 FvH4_6g44105
malus_domestica	MD01G1096900.v1.1 MD02G1230400.v1.1 MD05G1226300.v1.1 MD09G1060000.v1.1 MD10G1207900.v1.1
prunus_persica	Prupe.1G289900_v2.0.a1
pyrus_communis	pycom04g03900 pycom05g20970 pycom10g17660
rosa_chinensis	RchiOBHm_Chr1g0314521 RchiOBHm_Chr1g0379221 RchiOBHm_Chr1g0379371 RchiOBHm_Chr1g0380681 RchiOBHm_Chr2g0114671 RchiOBHm_Chr4g0417601 RchiOBHm_Chr5g0025111 RchiOBHm_Chr5g0025141 RchiOBHm_Chr5g0025341 RchiOBHm_Chr5g0025391 RchiOBHm_Chr5g0025401 RchiOBHm_Chr5g0025431 RchiOBHm_Chr5g0026461 RchiOBHm_Chr5g0044581 RchiOBHm_Chr7g0196231 RchiOBHm_Chr7g0210551 RchiOBHm_Chr7g0210611
rosa_laevigata	RLG00000036334
rosa_multiflora	Rmu_co8021090.1_g000001 Rmu_co8025508.1_g000001 Rmu_co8173660.1_g000001 Rmu_sc0000936.1_g000004 Rmu_sc0005400.1_g000014 Rmu_sc0006827.1_g000017 Rmu_sc0034978.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044210 Rroxscaffold_1G00053750 Rroxscaffold_1G00053800 Rroxscaffold_1G00053990 Rroxscaffold_1G00054530 Rroxscaffold_2G00089210 Rroxscaffold_2G00089260 Rroxscaffold_2G00089290 Rroxscaffold_2G00138080
rosa_rugosa	Rorug04G0436200
rosa_samantha	Rh5AG038500 Rh5AG038700 Rh5AG249800 Rh5BG471500 Rh5DG185400 Rh7AG216200 Rh7BG201000
rosa_wichuraiana	Rw5G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 148
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	3 cut(s)	221, 234, 589
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	3 cut(s)	203, 291, 431
AfiI	CCNNNNNNNGG	2 cut(s)	556, 578
AgsI	TTSAA	2 cut(s)	199, 248
AjnI	CCWGG	2 cut(s)	220, 553
AluBI	AGCT	5 cut(s)	40, 53, 61, 382, 393
AluI	AGCT	5 cut(s)	40, 53, 61, 382, 393
Alw21I	GWGCWC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	221, 234, 589
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	2 cut(s)	117, 129
AvaII	GGWCC	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	222, 555
BfaI	CTAG	2 cut(s)	320, 390
BfmI	CTRYAG	3 cut(s)	56, 207, 485
BisI	GCNGC	2 cut(s)	59, 148
BlsI	GCNGC	2 cut(s)	60, 149
Bme1390I	CCNGG	2 cut(s)	222, 555
Bme18I	GGWCC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	222, 555
BmsI	GCATC	1 cut(s)	250
Bpu14I	TTCGAA	2 cut(s)	117, 129
BsaJI	CCNNGG	3 cut(s)	221, 457, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 578
Bse1I	ACTGG	2 cut(s)	170, 328
BseBI	CCWGG	2 cut(s)	222, 555
BseDI	CCNNGG	3 cut(s)	221, 457, 554
BseLI	CCNNNNNNNGG	2 cut(s)	556, 578
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	170, 328
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	556, 578
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	220
Bsp119I	TTCGAA	2 cut(s)	117, 129
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	226, 581
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	2 cut(s)	96, 148
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	3 cut(s)	60, 211, 489
BspPI	GGATC	3 cut(s)	221, 234, 589
BspQI	GCTCTTC	1 cut(s)	114
BspT104I	TTCGAA	2 cut(s)	117, 129
BsrI	ACTGG	2 cut(s)	170, 328
BssECI	CCNNGG	3 cut(s)	221, 457, 554
BssMI	GATC	2 cut(s)	226, 581
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	222, 555
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBI	TTCGAA	2 cut(s)	117, 129
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	457
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstKTI	GATC	2 cut(s)	229, 584
BstMBI	GATC	2 cut(s)	226, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 281
BstNI	CCWGG	2 cut(s)	222, 555
BstSCI	CCNGG	2 cut(s)	220, 553
BstSFI	CTRYAG	3 cut(s)	56, 207, 485
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	226, 581
BstYI	RGATCY	2 cut(s)	226, 581
BsuRI	GGCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	202, 290, 430
CviAII	CATG	3 cut(s)	458, 494, 537
CviJI	RGCY	8 cut(s)	28, 40, 53, 61, 147, 220, 382, 393
CviKI_1	RGCY	8 cut(s)	28, 40, 53, 61, 147, 220, 382, 393
CviQI	GTAC	3 cut(s)	202, 290, 430
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	228, 583
DpnII	GATC	2 cut(s)	226, 581
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	220, 553
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	461, 497, 540
FatI	CATG	3 cut(s)	457, 493, 536
Fnu4HI	GCNGC	2 cut(s)	59, 148
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	59, 148
FspBI	CTAG	2 cut(s)	320, 390
GluI	GCNGC	2 cut(s)	59, 148
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	461, 497, 540
HindIII	AAGCTT	2 cut(s)	38, 380
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	106, 163, 405, 466
Hpy188III	TCNNGA	2 cut(s)	230, 452
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	194, 473
HpyCH4V	TGCA	3 cut(s)	58, 209, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 281
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	194, 473
Hsp92II	CATG	3 cut(s)	461, 497, 540
Kzo9I	GATC	2 cut(s)	226, 581
LguI	GCTCTTC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	320, 390
MaeII	ACGT	2 cut(s)	194, 473
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	228, 583
MboI	GATC	2 cut(s)	226, 581
MboII	GAAGA	7 cut(s)	35, 38, 103, 106, 131, 143, 418
MflI	RGATCY	2 cut(s)	226, 581
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	341, 563
MnlI	CCTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	339, 438
MspA1I	CMGCKG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	222, 555
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	2 cut(s)	222, 555
MwoI	GCNNNNNNNGC	2 cut(s)	64, 281
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	226, 581
NlaIII	CATG	3 cut(s)	461, 497, 540
NlaIV	GGNNCC	1 cut(s)	228
NspV	TTCGAA	2 cut(s)	117, 129
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	60, 149
Psp124BI	GAGCTC	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	220, 553
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	220, 553
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	501
PstI	CTGCAG	3 cut(s)	60, 211, 489
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	226, 581
RsaI	GTAC	3 cut(s)	203, 291, 431
RsaNI	GTAC	3 cut(s)	202, 290, 430
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	339, 438
SatI	GCNGC	2 cut(s)	59, 148
Sau3AI	GATC	2 cut(s)	226, 581
Sau96I	GGNCC	1 cut(s)	501
ScrFI	CCNGG	2 cut(s)	222, 555
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	8 cut(s)	42, 55, 63, 197, 295, 384, 395, 476
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	3 cut(s)	56, 207, 485
SfuI	TTCGAA	2 cut(s)	117, 129
SinI	GGWCC	1 cut(s)	501
Sse9I	AATT	2 cut(s)	341, 563
SsiI	CCGC	2 cut(s)	96, 148
SspMI	CTAG	2 cut(s)	320, 390
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	220, 553
StyI	CCWWGG	1 cut(s)	457
TaiI	ACGT	2 cut(s)	197, 476
TaqI	TCGA	4 cut(s)	49, 117, 129, 335
TasI	AATT	2 cut(s)	341, 563
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	339, 438
Tru9I	TTAA	2 cut(s)	339, 438
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	50, 482
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	2 cut(s)	320, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.