pycom16g23640

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
24818027 .. 24819047
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGGCTTCTTCCACCATAAGTGTTTCCTTAATGTTGCTTATTCCGATGTCTCTACTAAGCTTTACGGTGGCTGCTGCCTCTACTGCCGACTTAAACCAAGACTTTGAGATTACATGGGGGGACGGACGTGCTAAGATTCTTAACAACGGCGAGCTTCTTACCCTTTCTCTCGACAAAGCCTCCGGTTCTGGATTTCAATCCAAACACGAGTATTTGTTCGGCAAGATCGACATGCAGCTCAAGCTTGTCCCTGGAAACTCCGCTGGCACCGTCACAGCCTACTACTTATCATCAAAAGGATCAACATGGGATGAGATAGACTTTGAGTTCTTGGGGAACTTGAGTGGAGACCCTTACATTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGCAACAGAGAGCAGCAATTCTACCTCTGGTTTGACCCAACTGCCGACTTCCACACATATTCCATCCTCTGGAACTCCCAGCGCATTATATTCTCAGTAGATGGAACTCCCATCAGAGAGTTCAAGAACCAAGAGTTGAACGGCGTTCCGTTTCCAAAAAGCCAGCCGATGAGGATATACTCGAGCCTGTGGAATGCCGATGATTGGGCAACAAGGGGAGGACTTGTGAAGACCGATTGGAGCCAAGCTCCTTTCACCGCGTCTTACAAGAATTTCAATGCTGAAGCATGCGTCTGGACTTCTGGAGCCTCCTCTTGCAGTTCTGCAACTTCAAGTAATGCTAACAATGGAGCTTGGCTTTCTCAAGACTTGGACTCTACAAGCCAAGACAGGCTGAAATGGGTGCGGACCAACTACATGATTTACAATTACTGTGCTGACACCAAGAGATTTCCCCAAGGCCTCCCGGTGGAATGCACCGCTTCATAG

Protein Analysis

293

Amino Acids

32.44

Weight (kDa)

5.1

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 32 - 211 4.3e-68 Glycosyl hydrolases family 16
XET_C PF06955 245 - 289 5.1e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 459
AccII CGCG 1 cut(s) 650
AciI CCGC 4 cut(s) 261, 648, 796, 870
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 2 cut(s) 361, 693
AfiI CCNNNNNNNGG 3 cut(s) 459, 594, 859
AgsI TTSAA 5 cut(s) 197, 514, 529, 667, 723
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 6 cut(s) 60, 154, 238, 244, 638, 743
AluI AGCT 6 cut(s) 60, 154, 238, 244, 638, 743
Alw26I GTCTC 2 cut(s) 54, 342
AlwI GGATC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 1 cut(s) 850
ApeKI GCWGC 4 cut(s) 71, 74, 235, 403
ApoI RAATTY 1 cut(s) 661
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 798
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 1 cut(s) 798
BanI GGYRCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 367, 626
BbvI GCAGC 4 cut(s) 58, 61, 247, 415
BccI CCATC 3 cut(s) 461, 485, 509
BceAI ACGGC 2 cut(s) 163, 547
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 54, 342
BisI GCNGC 4 cut(s) 72, 75, 236, 404
BlsI GCNGC 4 cut(s) 73, 76, 237, 405
Bme1390I CCNGG 2 cut(s) 252, 857
Bme18I GGWCC 1 cut(s) 798
BmeT110I CYCGRG 1 cut(s) 571
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 798
BmiI GGNNCC 3 cut(s) 268, 632, 697
BmrFI CCNGG 2 cut(s) 252, 857
BpiI GAAGAC 2 cut(s) 367, 626
BplI GAGNNNNNCTC 2 cut(s) 622, 654
BpmI CTGGAG 1 cut(s) 714
BpuEI CTTGAG 3 cut(s) 224, 361, 738
BpuMI CCSGG 1 cut(s) 857
BsaBI GATNNNNATC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 250, 382, 847
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 594, 859
Bse8I GATNNNNATC 1 cut(s) 196
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 250, 382, 847
BseGI GGATG 2 cut(s) 316, 453
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 459, 594, 859
BseMII CTCAG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 691
BseXI GCAGC 4 cut(s) 58, 61, 247, 415
BseYI CCCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 1 cut(s) 852
BshNI GGYRCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 2 cut(s) 183, 857
BslFI GGGAC 2 cut(s) 134, 233
BslI CCNNNNNNNGG 3 cut(s) 459, 594, 859
BsmAI GTCTC 2 cut(s) 54, 342
BsmFI GGGAC 2 cut(s) 134, 233
BsmI GAATGC 2 cut(s) 589, 869
BsnI GGCC 1 cut(s) 852
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 571
Bsp143I GATC 2 cut(s) 225, 299
BspACI CCGC 4 cut(s) 261, 648, 796, 870
BspANI GGCC 1 cut(s) 852
BspCNI CTCAG 1 cut(s) 497
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 3 cut(s) 268, 632, 697
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 342
BssECI CCNNGG 3 cut(s) 250, 382, 847
BssMI GATC 2 cut(s) 225, 299
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 382, 847
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 67, 271, 824
BstC8I GCNNGC 4 cut(s) 152, 265, 554, 679
BstDEI CTNAG 3 cut(s) 56, 132, 484
BstF5I GGATG 2 cut(s) 316, 453
BstFNI CGCG 1 cut(s) 650
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 2 cut(s) 228, 302
BstMAI GTCTC 2 cut(s) 54, 342
BstMBI GATC 2 cut(s) 225, 299
BstMWI GCNNNNNNNGC 2 cut(s) 83, 241
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 235, 681
BstSCI CCNGG 2 cut(s) 250, 855
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 4 cut(s) 58, 61, 247, 415
BstV2I GAAGAC 2 cut(s) 367, 626
BsuRI GGCC 1 cut(s) 852
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 316, 453
Cac8I GCNNGC 4 cut(s) 152, 265, 554, 679
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 798
CseI GACGC 2 cut(s) 639, 670
CviAII CATG 5 cut(s) 114, 232, 306, 678, 808
DdeI CTNAG 3 cut(s) 56, 132, 484
DpnI GATC 2 cut(s) 227, 301
DpnII GATC 2 cut(s) 225, 299
Eco130I CCWWGG 2 cut(s) 382, 847
Eco147I AGGCCT 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 798
Eco57I CTGAAG 2 cut(s) 361, 693
Eco88I CYCGRG 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 382, 847
ErhI CCWWGG 2 cut(s) 382, 847
FaeI CATG 5 cut(s) 117, 235, 309, 681, 811
FaqI GGGAC 2 cut(s) 134, 233
FatI CATG 5 cut(s) 113, 231, 305, 677, 807
Fnu4HI GCNGC 4 cut(s) 72, 75, 236, 404
FokI GGATG 2 cut(s) 323, 440
Fsp4HI GCNGC 4 cut(s) 72, 75, 236, 404
GlaI GCGC 1 cut(s) 473
GluI GCNGC 4 cut(s) 72, 75, 236, 404
GsaI CCCAGC 1 cut(s) 472
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 1 cut(s) 852
HapII CCGG 2 cut(s) 183, 857
HgaI GACGC 2 cut(s) 639, 670
HhaI GCGC 1 cut(s) 474
Hin1II CATG 5 cut(s) 117, 235, 309, 681, 811
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HindIII AAGCTT 2 cut(s) 58, 242
HinfI GANTC 2 cut(s) 136, 764
HpaII CCGG 2 cut(s) 183, 857
HphI GGTGA 1 cut(s) 637
Hpy188I TCNGA 2 cut(s) 45, 506
Hpy188III TCNNGA 7 cut(s) 170, 189, 460, 514, 685, 693, 755
HpyCH4III ACNGT 3 cut(s) 67, 271, 824
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 235, 708, 716, 867
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 241
HpyF3I CTNAG 3 cut(s) 56, 132, 484
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 5 cut(s) 117, 235, 309, 681, 811
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 225, 299
LmnI GCTCC 4 cut(s) 630, 643, 695, 740
Lsp1109I GCAGC 4 cut(s) 58, 61, 247, 415
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 227, 301
MboI GATC 2 cut(s) 225, 299
MboII GAAGA 3 cut(s) 353, 367, 631
MluCI AATT 3 cut(s) 407, 661, 817
MlyI GAGTC 1 cut(s) 758
MnlI CCTC 9 cut(s) 88, 190, 425, 467, 555, 602, 709, 712, 863
MseI TTAA 3 cut(s) 29, 92, 141
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 183, 857
MspR9I CCNGG 2 cut(s) 252, 857
Mva1269I GAATGC 2 cut(s) 589, 869
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 2 cut(s) 83, 241
NciI CCSGG 1 cut(s) 857
NdeII GATC 2 cut(s) 225, 299
NlaIII CATG 5 cut(s) 117, 235, 309, 681, 811
NlaIV GGNNCC 3 cut(s) 268, 632, 697
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 2 cut(s) 235, 681
PaeI GCATGC 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 571
PceI AGGCCT 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 2 cut(s) 589, 869
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 4 cut(s) 73, 76, 237, 405
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 468
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 268, 632, 697
PspPI GGNCC 1 cut(s) 798
PspXI VCTCGAGB 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 29, 92, 141
SatI GCNGC 4 cut(s) 72, 75, 236, 404
Sau3AI GATC 2 cut(s) 225, 299
Sau96I GGNCC 1 cut(s) 798
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 2 cut(s) 252, 857
SetI ASST 8 cut(s) 62, 130, 156, 240, 246, 417, 640, 745
Sfr274I CTCGAG 1 cut(s) 571
SinI GGWCC 1 cut(s) 798
SlaI CTCGAG 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 4 cut(s) 239, 340, 571, 753
SmoI CTYRAG 4 cut(s) 239, 340, 571, 753
SphI GCATGC 1 cut(s) 681
Sse9I AATT 3 cut(s) 407, 661, 817
SseBI AGGCCT 1 cut(s) 852
SsiI CCGC 4 cut(s) 261, 648, 796, 870
StuI AGGCCT 1 cut(s) 852
StyD4I CCNGG 2 cut(s) 250, 855
StyI CCWWGG 2 cut(s) 382, 847
TaaI ACNGT 3 cut(s) 67, 271, 824
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 171, 228, 572
TaqII GACCGA 1 cut(s) 638
TasI AATT 3 cut(s) 407, 661, 817
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 3 cut(s) 29, 92, 141
Tru9I TTAA 3 cut(s) 29, 92, 141
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 4 cut(s) 71, 74, 235, 403
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 864
TspGWI ACGGA 2 cut(s) 138, 528
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 798
XapI RAATTY 1 cut(s) 661
XceI RCATGY 2 cut(s) 235, 681
XhoI CTCGAG 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.