Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2656572 .. 2656829

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGAACCATATGTTACTATTTTTGTTATTTCCTGTGGTGTATAATTCTGGTCTCCAAAAATATGAACTGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTAGATGATATGATGTTTGGGCATCTGGATTGGCAATCCTGGCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

59

Amino Acids

7.01

Weight (kDa)

5.84

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	167
CviAII	CATG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	128
FaiI	YATR	9 cut(s)	9, 11, 42, 63, 77, 104, 126, 140, 178
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	33, 45, 53, 129, 140, 154
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	12, 107
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	2 cut(s)	89, 92
MspA1I	CMGCKG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeI	CATATG	1 cut(s)	9
NlaIII	CATG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	160
SgeI	CNNG	7 cut(s)	44, 60, 80, 107, 128, 137, 167
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	17, 78, 165
XceI	RCATGY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.