RchiOBHm_Chr1g0317661

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000539
Physical Location & Seq
Reverse (-)
5213249 .. 5215032
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGCTTTCAAAGACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAGGAGAAAGGAATTGATATTATTACAATAAATCCAGGATGGGTGATCGGCCCTCTTTTACAGCCAACTCTGAACTTTAGTGATGAAATAGTTCTGAAACTCGTAAATGGGACTGAAAAGTTTCCCAACAAAACTTACGGATTTGTTGATGTTAGAGATGTTGCTAATGCCCATATTCTAGCCTTTGAAAACCTATCAGCTAGTGGACGTTATTGTTTAGTTGGAAGCGTAAAACACTGTTCAGAGGTTGTGAAAATGTTGCTCGAGATCTCCCCTGCTCTCAATCTTCCAGATAAATGTGCAGATGACGAGCCTTTCTCACCAAATTACCAGGTGTCCAAGGAACGAGCCCAAACTTTGGGGGTAAAGTATATTCCGCTTGAAGTGTCTCTGAAGGATACAGTTGAAAGTTTGAAGGACATGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

5.22

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 403
AciI CCGC 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 403
AgsI TTSAA 5 cut(s) 9, 233, 428, 452, 460
AjnI CCWGG 2 cut(s) 79, 375
AluBI AGCT 3 cut(s) 20, 29, 245
AluI AGCT 3 cut(s) 20, 29, 245
Alw26I GTCTC 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 29
Asp700I GAANNNNTTC 3 cut(s) 135, 165, 473
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 100, 357
AvaI CYCGRG 1 cut(s) 308
BanII GRGCYC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 81, 377
BciVI GTATCC 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 224, 246
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 1 cut(s) 312
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 81, 377
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 81, 377
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 81, 377
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 2 cut(s) 90, 312
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 2 cut(s) 90, 312
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 81, 377
Bst4CI ACNGT 2 cut(s) 284, 448
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 93, 315
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 2 cut(s) 90, 312
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 2 cut(s) 81, 377
BstSCI CCNGG 2 cut(s) 79, 375
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 95
CsiI ACCWGGT 1 cut(s) 375
CviAII CATG 1 cut(s) 466
CviJI RGCY 8 cut(s) 20, 29, 96, 109, 227, 245, 358, 395
CviKI_1 RGCY 8 cut(s) 20, 29, 96, 109, 227, 245, 358, 395
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 92, 314
DpnII GATC 2 cut(s) 90, 312
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 79, 375
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 469
FaiI YATR 3 cut(s) 219, 417, 467
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 224, 246
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 1 cut(s) 469
HphI GGTGA 2 cut(s) 100, 357
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 4 cut(s) 117, 141, 289, 438
Hpy188III TCNNGA 2 cut(s) 310, 335
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 433, 454
HpyCH4III ACNGT 2 cut(s) 284, 448
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 44, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 469
Kzo9I GATC 2 cut(s) 90, 312
LpnPI CCDG 6 cut(s) 66, 93, 333, 348, 362, 389
Lsp1109I GCAGC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 375
MaeI CTAG 2 cut(s) 224, 246
MaeII ACGT 1 cut(s) 253
MalI GATC 2 cut(s) 92, 314
MboI GATC 2 cut(s) 90, 312
MboII GAAGA 2 cut(s) 323, 466
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 2 cut(s) 57, 370
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 16, 108, 283
MroXI GAANNNNTTC 3 cut(s) 135, 165, 473
MspR9I CCNGG 2 cut(s) 81, 377
MvaI CCWGG 2 cut(s) 81, 377
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 90, 312
NlaIII CATG 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 308
PdmI GAANNNNTTC 3 cut(s) 135, 165, 473
PflMI CCANNNNNTGG 1 cut(s) 403
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 79, 375
PspGI CCWGG 2 cut(s) 79, 375
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 312
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 90, 312
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 81, 377
SduI GDGCHC 1 cut(s) 397
SetI ASST 7 cut(s) 22, 31, 240, 247, 256, 294, 381
SexAI ACCWGGT 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 57, 370
SsiI CCGC 1 cut(s) 422
SspMI CTAG 2 cut(s) 224, 246
StyD4I CCNGG 2 cut(s) 79, 375
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 284, 448
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 309
TasI AATT 2 cut(s) 57, 370
TscAI CASTG 1 cut(s) 287
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 308
XmnI GAANNNNTTC 3 cut(s) 135, 165, 473
XspI CTAG 2 cut(s) 224, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.