Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001169

Physical Location & Seq

Genomic Coordinates Forward (+)

8869489 .. 8876460

Gene Structure 6972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTGGCGGCAATCAAATGCCCCTTCTTTCTTACTCACTCCCTGCCCCCCTCCTCCTCTCCCTCGCCATCCTTCAAAATCACCTGTTCTGCGGCGGCGTCGGTGGCGGAGGAGAGGAGCGAGATTCGGCTAGGACTGCCCAGCAAAGGCCGCATGGCCGCTGACACTCTCGATCTCCTCAAGGACTGCCAGTTGTCCGTCAAGCACGTCAATCCTCGCCAGTACGTTGCTAAAATTCCTGAGCTGTCTAATTTGGAAGTGTGGTTTCAAAGGCCTAAGGACATTGTGAGGAAGTTGCTGTCTGGGGATTTGGACCTTGGCATTGCCGGTCTTGACACCGTCAGTGAATATGGACGGGGGAGTGAAGATCTTATCATTGTTCATGATGCTCTTGGGTATGGGGAGTGCCACTTATCCCTTGCAATACCAAAATATGGGATTTTTGAGAACATTAACTCACTGAATGAGCTAGCACAAATGCCTCAATGGACTAGAGAGAAACCTCTGCGAGTTGCTACTGGCTTCACCTATTTGGGTCCCAAATTTGTGAAAGAAAATGGACTGGACCATGTGTGTTTTTCCACAGCTGATGGAGCCCTTGAGGCAGCTCCTGCGATGGGAATAGCTGATGCAATTTTGGACCTTGTGAGTAGTGGGATAACACTGAAAGAAAACAATTTGAAAGAGATCGAGGGAGGAGTTGTGTTGCGAAGTCAAGCAGTTCTTGTTGCAAGCAAGAGATCCTTGCTCAAAATGAAAAGTGCACTTGAAACGACACATGAGATTCTGGAAAGATTGGAGGCACATCTAAAGGCAGAGGGTCAGTATACGGTGGTTGCAAATATGAGGGGAAATAGTGCACAAGAAGTGGCTGAGCGAGTCCTTAGCCAGCCATCATTAGCTGGTTTGCAGGGACCCACTGTAAGTACAGTGTATTGCAAACGTGATGGGCAAATAAAAGCAGATTACTACGCCATTGTCATATGTGTGCCAAAAAAGGCCCTCTACAAGTCTGTACAACAACTGAGAGCGATCGGAGGCAGTGGGGTTCTATATTCCCCTTTGACTTACATTTTTGATGAAGAAACTCCAAGATGGCGTGAACTTCTCTCAAAACTTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

375

Amino Acids

40.93

Weight (kDa)

7.04

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	91 - 267	3.8e-36	ATP phosphoribosyltransferase
HisG_C	PF08029	272 - 356	3.4e-11	HisG, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09795 AT1G58080
fragaria_vesca	FvH4_7g02550 FvH4_7g02550 FvH4_7g02550
malus_domestica	MD05G1010900.v1.1 MD10G1009700.v1.1
prunus_persica	Prupe.8G013100_v2.0.a1 Prupe.8G013600_v2.0.a1
pyrus_communis	pycom05g00590 pycom10g00580 pycom10g00590
rosa_chinensis	RchiOBHm_Chr1g0321201 RchiOBHm_Chr1g0321211 RchiOBHm_Chr1g0321241 RchiOBHm_Chr1g0321261 RchiOBHm_Chr1g0321271 RchiOBHm_Chr6g0256761 RchiOBHm_Chr6g0256771 RchiOBHm_Chr6g0258031 RchiOBHm_Chr6g0258041
rosa_laevigata	RLG00000030432
rosa_multiflora	Rmu_co8321781.1_g000001 Rmu_sc0000724.1_g000001 Rmu_sc0003076.1_g000015 Rmu_sc0005177.1_g000024 Rmu_sc0005177.1_g000025 Rmu_sc0007261.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433870 Rroxscaffold_160G00433890 Rroxscaffold_160G00433910 Rroxscaffold_2G00092780 Rroxscaffold_4G00327860 Rroxscaffold_4G00327870 Rroxscaffold_4G00327900 Rroxscaffold_4G00327910 Rroxscaffold_4G00327920 Rroxscaffold_7G00208140
rosa_rugosa	Rorug01G0031900
rosa_samantha	Rh1AG043900 Rh1BG041500 Rh1BG041600 Rh1CG046500 Rh1DG051100 Rh2BG534600 Rh2DG543500 Rh6AG096400 Rh6AG096500 Rh6BG087700 Rh6BG087800 Rh6CG083500 Rh6DG079300 Rh6DG079400
rosa_wichuraiana	Rw0G006990 Rw1G003870 Rw2G043020 Rw6G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	2 cut(s)	234, 542
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	224, 928, 1017
AfiI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
AgsI	TTSAA	4 cut(s)	76, 269, 682, 770
AjiI	CACGTC	1 cut(s)	208
AluBI	AGCT	6 cut(s)	244, 469, 587, 608, 626, 902
AluI	AGCT	6 cut(s)	244, 469, 587, 608, 626, 902
Alw21I	GWGCWC	2 cut(s)	766, 862
Alw44I	GTGCAC	2 cut(s)	762, 858
AlwI	GGATC	1 cut(s)	735
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	5 cut(s)	148, 156, 272, 999, 1120
ApaLI	GTGCAC	2 cut(s)	762, 858
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	2 cut(s)	234, 542
AspS9I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
AsuHPI	GGTGA	2 cut(s)	73, 517
AsuNHI	GCTAGC	1 cut(s)	469
AvaII	GGWCC	5 cut(s)	313, 536, 565, 640, 914
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	2 cut(s)	766, 862
BanII	GRGCYC	1 cut(s)	598
Bbv12I	GWGCWC	2 cut(s)	766, 862
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	6 cut(s)	76, 584, 610, 901, 941, 1089
BfaI	CTAG	3 cut(s)	131, 470, 492
BglI	GCCNNNNNGGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	6 cut(s)	10, 94, 97, 152, 160, 607
Bme18I	GGWCC	5 cut(s)	313, 536, 565, 640, 914
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
BmiI	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
BmsI	GCATC	2 cut(s)	376, 619
BmtI	GCTAGC	1 cut(s)	473
Bpu10I	CCTNAGC	2 cut(s)	240, 884
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	2 cut(s)	164, 620
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 434, 617
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	4 cut(s)	190, 220, 523, 567
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	231, 864, 1016
BseNI	ACTGG	4 cut(s)	190, 220, 523, 567
BseRI	GAGGAG	6 cut(s)	43, 46, 125, 130, 167, 711
BseSI	GKGCMC	2 cut(s)	766, 862
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	1035
BshFI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BsiEI	CGRYCG	1 cut(s)	1035
BsiHKAI	GWGCWC	2 cut(s)	766, 862
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	522, 927
BslI	CCNNNNNNNGG	3 cut(s)	146, 434, 617
BsmFI	GGGAC	2 cut(s)	522, 927
BsnI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
Bsp1286I	GDGCHC	3 cut(s)	598, 766, 862
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	5 cut(s)	172, 367, 687, 740, 1032
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
BspANI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BspCNI	CTCAG	3 cut(s)	232, 865, 1017
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
BspOI	GCTAGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	4 cut(s)	190, 220, 523, 567
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	5 cut(s)	172, 367, 687, 740, 1032
BssNAI	GTATAC	1 cut(s)	828
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	340, 832, 922, 931
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	471, 733, 890
BstDEI	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	5 cut(s)	175, 370, 690, 743, 1035
BstMBI	GATC	5 cut(s)	172, 367, 687, 740, 1032
BstMCI	CGRYCG	1 cut(s)	1035
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
BstSLI	GKGCMC	2 cut(s)	766, 862
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	367, 740
BstYI	RGATCY	2 cut(s)	367, 740
BstZ17I	GTATAC	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
BtgZI	GCGATG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	6 cut(s)	349, 458, 662, 918, 936, 1048
Cac8I	GCNNGC	3 cut(s)	471, 733, 890
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	223, 927, 1016
CviAII	CATG	4 cut(s)	154, 383, 569, 779
CviQI	GTAC	3 cut(s)	223, 927, 1016
DdeI	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
DpnI	GATC	5 cut(s)	174, 369, 689, 742, 1034
DpnII	GATC	5 cut(s)	172, 367, 687, 740, 1032
EaeI	YGGCCR	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	598
Eco47I	GGWCC	5 cut(s)	313, 536, 565, 640, 914
Eco81I	CCTNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	3 cut(s)	536, 914, 1000
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	157, 386, 572, 782
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 728, 760
FaqI	GGGAC	2 cut(s)	522, 927
FatI	CATG	4 cut(s)	153, 382, 568, 778
FauNDI	CATATG	1 cut(s)	983
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
FspBI	CTAG	3 cut(s)	131, 470, 492
GluI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	150, 158, 274, 1001, 1122
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	157, 386, 572, 782
HinfI	GANTC	3 cut(s)	124, 784, 879
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	73, 517
Hpy166II	GTNNAC	4 cut(s)	764, 828, 860, 1103
Hpy188I	TCNGA	1 cut(s)	1037
Hpy188III	TCNNGA	5 cut(s)	170, 239, 332, 383, 788
Hpy8I	GTNNAC	4 cut(s)	764, 828, 860, 1103
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	34, 82
HpyCH4III	ACNGT	4 cut(s)	340, 832, 922, 931
HpyCH4IV	ACGT	3 cut(s)	207, 225, 943
HpyCH4V	TGCA	8 cut(s)	422, 632, 731, 764, 839, 860, 910, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
HpyF3I	CTNAG	5 cut(s)	240, 276, 873, 884, 1025
HpySE526I	ACGT	3 cut(s)	207, 225, 943
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	157, 386, 572, 782
KflI	GGGWCCC	2 cut(s)	536, 914
Kzo9I	GATC	5 cut(s)	172, 367, 687, 740, 1032
LmnI	GCTCC	3 cut(s)	117, 593, 613
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	376, 619
MaeI	CTAG	3 cut(s)	131, 470, 492
MaeII	ACGT	3 cut(s)	207, 225, 943
MalI	GATC	5 cut(s)	174, 369, 689, 742, 1034
MboI	GATC	5 cut(s)	172, 367, 687, 740, 1032
MboII	GAAGA	2 cut(s)	377, 1094
MflI	RGATCY	2 cut(s)	367, 740
MhlI	GDGCHC	3 cut(s)	598, 766, 862
MluCI	AATT	5 cut(s)	234, 250, 542, 633, 676
MlyI	GAGTC	1 cut(s)	888
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	986
MspA1I	CMGCKG	2 cut(s)	161, 587
MspI	CCGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	6 cut(s)	104, 136, 150, 593, 602, 611
NdeI	CATATG	1 cut(s)	983
NdeII	GATC	5 cut(s)	172, 367, 687, 740, 1032
NheI	GCTAGC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	157, 386, 572, 782
NlaIV	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	124, 784
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	10, 94, 97, 152, 160, 607
Ple19I	CGATCG	1 cut(s)	1035
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	2 cut(s)	536, 914
Psp5II	RGGWCCY	2 cut(s)	536, 914
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	5 cut(s)	537, 538, 595, 915, 916
PspPI	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
PspPPI	RGGWCCY	2 cut(s)	536, 914
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	367, 740
PsyI	GACNNNGTC	1 cut(s)	338
PvuI	CGATCG	1 cut(s)	1035
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	224, 928, 1017
RsaNI	GTAC	3 cut(s)	223, 927, 1016
RseI	CAYNNNNRTG	1 cut(s)	986
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	6 cut(s)	9, 93, 96, 151, 159, 606
Sau3AI	GATC	5 cut(s)	172, 367, 687, 740, 1032
Sau96I	GGNCC	6 cut(s)	313, 536, 565, 640, 914, 1000
SchI	GAGTC	1 cut(s)	888
SduI	GDGCHC	3 cut(s)	598, 766, 862
SfaNI	GCATC	2 cut(s)	376, 619
SinI	GGWCC	5 cut(s)	313, 536, 565, 640, 914
SmiMI	CAYNNNNRTG	1 cut(s)	986
SmlI	CTYRAG	2 cut(s)	179, 599
SmoI	CTYRAG	2 cut(s)	179, 599
Sse9I	AATT	5 cut(s)	234, 250, 542, 633, 676
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	6 cut(s)	8, 92, 95, 107, 151, 159
SspMI	CTAG	3 cut(s)	131, 470, 492
StuI	AGGCCT	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	4 cut(s)	340, 832, 922, 931
TaiI	ACGT	3 cut(s)	210, 228, 946
TaqI	TCGA	2 cut(s)	171, 690
TasI	AATT	5 cut(s)	234, 250, 542, 633, 676
TatI	WGTACW	2 cut(s)	926, 1015
TauI	GCSGC	5 cut(s)	11, 95, 98, 153, 161
TfiI	GAWTC	2 cut(s)	124, 784
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	6 cut(s)	349, 465, 669, 925, 936, 1048
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	371, 770, 1095
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	6 cut(s)	349, 465, 669, 925, 936, 1048
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	434
VneI	GTGCAC	2 cut(s)	762, 858
VpaK11BI	GGWCC	5 cut(s)	313, 536, 565, 640, 914
XapI	RAATTY	2 cut(s)	234, 542
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	3 cut(s)	131, 470, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.