Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

10854804 .. 10855295

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAATTTTACCTGCAATGATTATAATGCCGCTGCTGAATTTACTTGTGGATCTGGACATATCAATCCTGTCAAAGCTATAGACCCGGGGCTTGTATATGAAGCTTCTAAGGAAGACTACATAAAGTTGCTCTGCTTGGTCTTAAACCAGACCAGTGTTAGACTTATATCAGGAGATAATAGCACTTGCTCTACAGGCTCTGACAAAGGATCTTTACATGGTCACAATTACCCATCGCTGGCAGCTGCTGTCACACCAAAGAAACCTTTTTCATTCAAATTTCACAGAAAAGTTAAGAATGTTGGCCTTGCAAACTCCACCTACAAGGCCAAAATATTCGCCGGCAACTCTACTGATGAAGCTGACATCAAAGTGGTGCCTGAAGTCCTTTCCTTCAAGTGCTTGAATGAAGAGAAGACTTTTGATGTGACTGTTGTTGGAAAAGGTTTGTCAGAAGAAGTACAATCAGATGTCTCTGCATCGCTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

163

Amino Acids

17.51

Weight (kDa)

6.41

Isoelectric Point (pI)

18.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	76 - 149	2.2e-14	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	376
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	58, 217
AcsI	RAATTY	3 cut(s)	4, 38, 278
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	277, 397, 406
AluBI	AGCT	4 cut(s)	77, 104, 245, 362
AluI	AGCT	4 cut(s)	77, 104, 245, 362
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	2 cut(s)	58, 217
AlwNI	CAGNNNCTG	2 cut(s)	200, 248
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	304, 327
ApeKI	GCWGC	3 cut(s)	32, 242, 245
ApoI	RAATTY	3 cut(s)	4, 38, 278
AsuC2I	CCSGG	2 cut(s)	86, 87
AvaI	CYCGRG	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	2 cut(s)	120, 422
BbvI	GCAGC	3 cut(s)	19, 232, 254
BccI	CCATC	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	1 cut(s)	478
BfmI	CTRYAG	2 cut(s)	78, 192
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	4 cut(s)	30, 33, 243, 246
BlsI	GCNGC	4 cut(s)	31, 34, 244, 247
Bme1390I	CCNGG	2 cut(s)	86, 87
BmeT110I	CYCGRG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	86, 87
BmsI	GCATC	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	120, 422
BpuMI	CCSGG	2 cut(s)	86, 87
BsaJI	CCNNGG	2 cut(s)	85, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	85, 86
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	19, 232, 254
BshFI	GGCC	2 cut(s)	306, 329
BshNI	GGYRCC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	86, 342
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	306, 329
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	50, 209
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	306, 329
BspLI	GGNNCC	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	58, 217
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	85, 86
BssMI	GATC	2 cut(s)	50, 209
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	240, 343
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	53, 212
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	2 cut(s)	50, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	84, 85
BstSFI	CTRYAG	2 cut(s)	78, 192
BstV1I	GCAGC	3 cut(s)	19, 232, 254
BstV2I	GAAGAC	2 cut(s)	120, 422
BstX2I	RGATCY	2 cut(s)	50, 209
BstYI	RGATCY	2 cut(s)	50, 209
BsuRI	GGCC	2 cut(s)	306, 329
BtgZI	GCGATG	2 cut(s)	219, 465
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	240, 343
CaiI	CAGNNNCTG	2 cut(s)	200, 248
Cfr10I	RCCGGY	1 cut(s)	341
Cfr9I	CCCGGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	8 cut(s)	77, 91, 104, 198, 245, 306, 329, 362
CviKI_1	RGCY	8 cut(s)	77, 91, 104, 198, 245, 306, 329, 362
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	52, 211
DpnII	GATC	2 cut(s)	50, 209
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	85
FaeI	CATG	1 cut(s)	221
FaiI	YATR	8 cut(s)	24, 60, 80, 97, 99, 122, 167, 219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	30, 33, 243, 246
Fsp4HI	GCNGC	4 cut(s)	30, 33, 243, 246
GluI	GCNGC	4 cut(s)	30, 33, 243, 246
HaeIII	GGCC	2 cut(s)	306, 329
HapII	CCGG	2 cut(s)	86, 342
Hin1II	CATG	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	102
HpaII	CCGG	2 cut(s)	86, 342
Hpy188I	TCNGA	3 cut(s)	202, 454, 469
Hpy188III	TCNNGA	2 cut(s)	54, 171
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	15, 311, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	50, 209
Lsp1109I	GCAGC	3 cut(s)	19, 232, 254
LweI	GCATC	1 cut(s)	488
MaeIII	GTNAC	3 cut(s)	221, 250, 427
MalI	GATC	2 cut(s)	52, 211
MboI	GATC	2 cut(s)	50, 209
MboII	GAAGA	4 cut(s)	125, 422, 427, 467
MflI	RGATCY	2 cut(s)	50, 209
MluCI	AATT	4 cut(s)	4, 38, 226, 278
MmeI	TCCRAC	1 cut(s)	418
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	2 cut(s)	143, 294
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	32, 245
MspI	CCGG	2 cut(s)	86, 342
MspR9I	CCNGG	2 cut(s)	86, 87
MwoI	GCNNNNNNNGC	1 cut(s)	195
NaeI	GCCGGC	1 cut(s)	343
NciI	CCSGG	2 cut(s)	86, 87
NdeII	GATC	2 cut(s)	50, 209
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	3 cut(s)	221, 250, 427
PdiI	GCCGGC	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	31, 34, 244, 247
PsiI	TTATAA	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	378
PstNI	CAGNNNCTG	2 cut(s)	200, 248
PsuI	RGATCY	2 cut(s)	50, 209
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	143, 294
SatI	GCNGC	4 cut(s)	30, 33, 243, 246
Sau3AI	GATC	2 cut(s)	50, 209
ScrFI	CCNGG	2 cut(s)	86, 87
SetI	ASST	8 cut(s)	14, 79, 106, 247, 268, 323, 364, 448
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	2 cut(s)	78, 192
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	4, 38, 226, 278
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	84, 85
TaaI	ACNGT	1 cut(s)	433
TasI	AATT	4 cut(s)	4, 38, 226, 278
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	143, 294
Tru9I	TTAA	2 cut(s)	143, 294
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	3 cut(s)	221, 250, 427
TseI	GCWGC	3 cut(s)	32, 242, 245
Tsp45I	GTSAC	3 cut(s)	221, 250, 427
TspDTI	ATGAA	5 cut(s)	17, 114, 261, 372, 423
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	160
XapI	RAATTY	3 cut(s)	4, 38, 278
XmaI	CCCGGG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.