RchiOBHm_Chr1g0343851

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000819
Physical Location & Seq
Reverse (-)
36127643 .. 36128842
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAACATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCATGGTGCTATTGTGAGAGTCGAATTCTCGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGTGACCTTAGTTCTTTTTATCTACGTGTCATTGTTTCAGGTGAAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.87

Weight (kDa)

8.44

Isoelectric Point (pI)

17.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 25 - 70 2.5e-23 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 19
ApoI RAATTY 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 196, 235
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 149
BccI CCATC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BfuAI ACCTGC 1 cut(s) 49
BglI GCCNNNNNGGC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 149
BssMI GATC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 190
BstEII GGTNACC 1 cut(s) 184
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 154
BveI ACCTGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 120
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
DraI TTTAAA 1 cut(s) 94
Eco32I GATATC 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 141
EcoRV GATATC 1 cut(s) 168
FaeI CATG 1 cut(s) 123
FaiI YATR 7 cut(s) 11, 37, 46, 107, 121, 175, 177
FatI CATG 1 cut(s) 119
FauNDI CATATG 1 cut(s) 175
Hin1II CATG 1 cut(s) 123
HinfI GANTC 1 cut(s) 136
HphI GGTGA 2 cut(s) 196, 235
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 3 cut(s) 41, 97, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 3 cut(s) 41, 97, 207
Hsp92II CATG 1 cut(s) 123
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 2 cut(s) 44, 206
MaeII ACGT 3 cut(s) 41, 97, 207
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 2 cut(s) 23, 80
MseI TTAA 2 cut(s) 93, 114
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 123
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 184
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 151
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 93, 114
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 154
SetI ASST 6 cut(s) 44, 63, 100, 191, 210, 225
SgeI CNNG 7 cut(s) 65, 71, 132, 158, 170, 220, 233
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 141
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 3 cut(s) 44, 100, 210
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 141
Tru1I TTAA 2 cut(s) 93, 114
Tru9I TTAA 2 cut(s) 93, 114
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
XapI RAATTY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.