RchiOBHm_Chr1g0367931

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001467
Physical Location & Seq
Forward (+)
58144640 .. 58147536
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGAAATTTGAGTACCAAAAGAAGGTCGCCTCGCTGAGCAAGCTGAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGCAGCAGTGAGTCATCTACATATAAGATACATAGTTGACATGCAATCCATGGATCCAACAGTATCAAAGATAAACTCTTTTCGTTCAGCTTGTTGCAGGATAGAAAACTCTAGGATATCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

70

Amino Acids

8.05

Weight (kDa)

9.67

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 1 - 57 6.7e-12 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 134, 147
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 2 cut(s) 14, 58
AfiI CCNNNNNNNGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 43, 176
AluI AGCT 2 cut(s) 43, 176
AlwI GGATC 2 cut(s) 134, 147
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 5
BamHI GGATCC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 101
BfaI CTAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 26, 78
BseXI GCAGC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 22
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 27, 77
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 134, 147
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 35, 64
BstDSI CCRYGG 1 cut(s) 135
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 13, 57
CviAII CATG 2 cut(s) 127, 136
CviJI RGCY 2 cut(s) 43, 176
CviKI_1 RGCY 2 cut(s) 43, 176
CviQI GTAC 2 cut(s) 13, 57
DdeI CTNAG 2 cut(s) 35, 64
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 135
Eco32I GATATC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 130, 139
FaiI YATR 6 cut(s) 108, 110, 119, 128, 137, 208
FatI CATG 2 cut(s) 126, 135
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 198
FspEI CC 9 cut(s) 8, 29, 43, 59, 122, 148, 156, 169, 184
GluI GCNGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 130, 139
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 130, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 35, 64
Hsp92II CATG 2 cut(s) 130, 139
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 198
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 135
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 130, 139
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 130
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 14, 58
RsaNI GTAC 2 cut(s) 13, 57
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 106
SetI ASST 3 cut(s) 27, 45, 178
SgeI CNNG 7 cut(s) 43, 52, 96, 139, 148, 189, 196
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 148
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 56
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 99
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.