AT1G12280

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4174875 .. 4178021
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12280.1

Sequence Viewer

Length: 2685 bp
ATGGGAGCTTGTTTAACACTCTCGTTCTCTTGTGATGAAGTTGTGAATCAAATCTCTCAAGGTTTATGCATCAACGTGGGTTATATTTGCGAGCTCTCCAAGAATGTAGTGGCTATGAAGAAAGACATGGAAGTGCTGAAGAAAAAGCGAGATGATGTGAAAAGAAGGGTAGATATAGAAGAGTTCACAAGGCGTCGTGAAAGGCTTTCTCAAGTCCAAGGATGGCTTACGAATGTCTCGACCGTCGAGAATAAATTCAATGAACTGCTTACCACTAATGACGCTGAGCTTCAAAGGTTGTGTCTCTTTGGATTTTGCTCTAAAAATGTGAAAATGAGCTATCTTTATGGGAAAAGGGTTGTCCTGATGTTGAAGGAGATTGAGAGTCTTAGTTCTCAAGGAGATTTTGATACTGTGACTTTAGCCACTCCAATAGCTAGGATTGAAGAGATGCCTATTCAACCTACAATCGTAGGTCAGGAAACAATGCTCGAAAGGGTATGGACCCGTCTCACAGAAGACGGAGACGAGATTGTGGGTCTTTATGGCATGGGTGGAGTAGGCAAAACCACCCTTCTCACACGAATCAACAACAAGTTTTCTGAAAAATGTAGCGGGTTTGGGGTTGTGATATGGGTGGTGGTGTCTAAGAGTCCAGATATCCATAGGATTCAAGGAGACATCGGGAAGAGACTAGACCTTGGAGGCGAAGAGTGGGATAATGTAAATGAAAACCAGAGAGCCCTTGACATATACAATGTCCTTGGGAAACAAAAATTTGTGTTGTTGTTGGATGATATATGGGAGAAAGTGAATTTAGAAGTGCTTGGAGTCCCTTATCCAAGCAGACAAAATGGATGCAAAGTAGTATTCACCACTCGTTCTAGAGATGTTTGTGGGCGTATGCGGGTTGATGACCCGATGGAAGTCAGTTGCCTAGAACCCAACGAAGCCTGGGAATTGTTCCAAATGAAAGTTGGAGAAAACACATTGAAAGGCCATCCAGACATTCCTGAACTTGCAAGAAAAGTTGCTGGAAAATGTTGTGGCCTACCATTGGCACTTAATGTCATTGGCGAGACCATGGCATGCAAAAGGATGGTACAAGAATGGCGTAACGCAATTGACGTTTTGAGCTCATATGCTGCAGAATTCCCTGGTATGGAACAAATTCTTCCTATTCTAAAGTATAGCTATGATAATTTAAACAAGGAGCAGGTGAAACCATGTTTCCTATATTGCTCTCTGTTTCCTGAAGATTATCGTATGGAAAAAGAGAGGTTGATAGACTATTGGATATGTGAGGGATTCATAGATGAAAATGAAAGTAGAGAAAGAGCATTAAGCCAAGGTTATGAGATCATTGGTATCCTTGTCCGAGCATGTTTGTTGTTGGAGGAAGCTATCAATAAAGAACAAGTTAAAATGCATGATGTGGTTCGGGAGATGGCTCTATGGATTGCATCTGATCTTGGGGAACATAAAGAAAGATGTATTGTGCAAGTCGGTGTTGGATTACGTGAGGTACCGAAAGTCAAGAACTGGAGTTCTGTGAGAAGGATGTCGCTGATGGAAAATGAGATTGAAATTTTATCTGGCAGTCCCGAATGCCTGGAACTTACAACTCTGTTCCTTCAGAAAAATGATTCATTGCTACATATCTCGGATGAATTCTTCCGGTGTATCCCAATGCTAGTTGTTTTGGATCTATCAGGGAATTCAAGTCTCCGGAAATTGCCTAACCAAATATCAAAGTTAGTCTCCTTGCGTTATCTTGACTTGTCGTGGACATACATTAAGCGGCTACCTGTCGGTCTACAAGAGTTGAAAAAGCTCAGATATTTGAGATTGGATTACATGAAGAGACTTAAGAGTATTTCAGGGATATCAAATATATCAAGTTTGAGGAAATTGCAACTTTTACAGTCTAAAATGTCGCTAGACATGAGCTTAGTGGAGGAGTTGCAGCTATTAGAACATTTAGAAGTTCTAAACATAAGTATCAAGTCAAGCTTGGTAGTGGAGAAGTTGTTAAATGCTCCCAGGTTGGTGAAATGTCTTCAAATCTTAGTACTTAGAGGAGTTCAGGAAGAATCATCCGGAGTATTGACTTTGCCAGATATGGATAATCTCAATAAAGTCATCATAAGGAAGTGTGGAATGTGTGAGATAAAGATAGAGAGGAAAACTTTATCATTATCATCGAACAGAAGTCCCAAAACTCAATTCCTCCATAACCTCTCCACTGTGCATATAAGTAGCTGTGATGGTCTGAAGGATTTGACGTGGTTGTTGTTCGCTCCTAACCTCACTAGTCTCGAGGTTCTGGACTCGGAACTAGTAGAAGGAATAATAAACCAAGAGAAAGCTATGACTATGAGTGGTATCATTCCTTTCCAGAAACTAGAGAGTCTACGCCTACACAATCTAGCGATGTTGAGGAGCATCTACTGGCAACCTCTGTCTTTTCCATGTCTGAAGACAATTCACATAACGAAGTGTCCTGAGCTGAGAAAGCTTCCATTGGATTCTGAAATTGCCATAAGGGATGAAGAACTTGTCATTAAGTACCAAGAGGAAGAATGGCTTGAAAGGGTTGAATGGGACAACGAAGCCACAAGACTCCGTTTCTTACCTTTTTTCAAGTTCTTTGGACCTGAATGGCAAGTTAGTTATGTGCGGTAG

Protein Analysis

894

Amino Acids

102.64

Weight (kDa)

6.04

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 160 - 331 1.8e-57 NB-ARC domain
WHD_DRP PF23559 416 - 484 4e-13 Disease resistance protein Winged helix domain
LRR_14 PF23598 518 - 832 1.3e-14 Leucine-rich repeat region
LRR_8 PF13855 539 - 598 1.9e-08 Leucine rich repeat
LRR_RPS2 PF23247 738 - 840 2.9e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1207
Acc36I ACCTGC 1 cut(s) 1207
Acc65I GGTACC 1 cut(s) 1525
AccB1I GGYRCC 1 cut(s) 1525
AccI GTMKAC 2 cut(s) 1816, 2413
AccIII TCCGGA 2 cut(s) 1728, 2099
AciI CCGC 4 cut(s) 615, 907, 1801, 2680
AclWI GGATC 1 cut(s) 1713
AcsI RAATTY 8 cut(s) 254, 776, 814, 1151, 1170, 1587, 1670, 1717
AcuI CTGAAG 5 cut(s) 158, 1275, 1619, 2294, 2498
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 4 cut(s) 1104, 1527, 2073, 2570
AfiI CCNNNNNNNGG 2 cut(s) 1057, 1162
AflII CTTAAG 1 cut(s) 1868
AhlI ACTAGT 2 cut(s) 2312, 2338
AjiI CACGTC 1 cut(s) 2286
AjnI CCWGG 4 cut(s) 953, 1156, 1611, 2042
AjuI GAANNNNNNNTTGG 2 cut(s) 2210, 2242
Alw21I GWGCWC 2 cut(s) 96, 1139
AlwI GGATC 1 cut(s) 1713
Ama87I CYCGRG 1 cut(s) 2318
Aor13HI TCCGGA 2 cut(s) 1728, 2099
AoxI GGCC 2 cut(s) 997, 1048
ApeKI GCWGC 2 cut(s) 1145, 1966
ApoI RAATTY 8 cut(s) 254, 776, 814, 1151, 1170, 1587, 1670, 1717
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
Asp700I GAANNNNTTC 2 cut(s) 254, 1170
Asp718I GGTACC 1 cut(s) 1525
AspS9I GGNCC 2 cut(s) 504, 2654
AsuHPI GGTGA 3 cut(s) 865, 1231, 2062
AvaI CYCGRG 1 cut(s) 2318
AvaII GGWCC 2 cut(s) 504, 2654
BaeI ACNNNNGTAYC 2 cut(s) 1984, 2017
BanI GGYRCC 1 cut(s) 1525
BanII GRGCYC 3 cut(s) 96, 745, 1139
BbsI GAAGAC 3 cut(s) 525, 2051, 2486
Bbv12I GWGCWC 2 cut(s) 96, 1139
BbvI GCAGC 2 cut(s) 1132, 1978
BccI CCATC 7 cut(s) 216, 916, 1008, 1093, 1441, 1564, 2261
BciT130I CCWGG 4 cut(s) 955, 1158, 1613, 2044
BciVI GTATCC 2 cut(s) 1379, 1694
BcuI ACTAGT 2 cut(s) 2312, 2338
BfmI CTRYAG 1 cut(s) 1146
BfrI CTTAAG 1 cut(s) 1868
BfuAI ACCTGC 1 cut(s) 1207
BfuI GTATCC 2 cut(s) 1379, 1694
BisI GCNGC 3 cut(s) 1146, 1802, 1967
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 1147, 1803, 1968
BmcAI AGTACT 1 cut(s) 2073
Bme1390I CCNGG 4 cut(s) 955, 1158, 1613, 2044
Bme18I GGWCC 2 cut(s) 504, 2654
BmeT110I CYCGRG 1 cut(s) 2318
BmgBI CACGTC 1 cut(s) 2286
BmgT120I GGNCC 2 cut(s) 504, 2654
BmiI GGNNCC 2 cut(s) 506, 1527
BmrFI CCNGG 4 cut(s) 955, 1158, 1613, 2044
BmsI GCATC 5 cut(s) 78, 441, 848, 1472, 2454
BpiI GAAGAC 3 cut(s) 525, 2051, 2486
BpmI CTGGAG 1 cut(s) 1564
Bpu10I CCTNAGC 1 cut(s) 2505
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 42, 195, 381
BsaAI YACGTR 1 cut(s) 1520
BsaHI GRCGYC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 8 cut(s) 217, 700, 763, 954, 1083, 1156, 1348, 2042
BsaWI WCCGGW 3 cut(s) 1677, 1728, 2099
BsaXI ACNNNNNCTCC 2 cut(s) 2015, 2045
Bsc4I CCNNNNNNNGG 2 cut(s) 1057, 1162
Bse1I ACTGG 2 cut(s) 1547, 2456
Bse3DI GCAATG 1 cut(s) 1649
BseAI TCCGGA 2 cut(s) 1728, 2099
BseBI CCWGG 4 cut(s) 955, 1158, 1613, 2044
BseDI CCNNGG 8 cut(s) 217, 700, 763, 954, 1083, 1156, 1348, 2042
BseGI GGATG 9 cut(s) 227, 799, 863, 1000, 1104, 1566, 1672, 2096, 2554
BseLI CCNNNNNNNGG 2 cut(s) 1057, 1162
BseMI GCAATG 1 cut(s) 1649
BseMII CTCAG 4 cut(s) 276, 1849, 2496, 2501
BseNI ACTGG 2 cut(s) 1547, 2456
BseRI GAGGAG 3 cut(s) 1973, 2094, 2455
BseXI GCAGC 2 cut(s) 1132, 1978
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 999, 1050
BshNI GGYRCC 1 cut(s) 1525
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 96, 1139
BsiHKCI CYCGRG 1 cut(s) 2318
BsiSI CCGG 3 cut(s) 1678, 1729, 2100
BslFI GGGAC 4 cut(s) 818, 1587, 2199, 2618
BslI CCNNNNNNNGG 2 cut(s) 1057, 1162
BsmBI CGTCTC 2 cut(s) 515, 519
BsmFI GGGAC 4 cut(s) 818, 1587, 2199, 2618
BsmI GAATGC 1 cut(s) 1613
BsnI GGCC 2 cut(s) 999, 1050
Bso31I GGTCTC 1 cut(s) 1073
BsoBI CYCGRG 1 cut(s) 2318
Bsp1286I GDGCHC 3 cut(s) 96, 745, 1139
Bsp13I TCCGGA 2 cut(s) 1728, 2099
Bsp143I GATC 3 cut(s) 1359, 1468, 1705
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 1083
BspACI CCGC 4 cut(s) 615, 907, 1801, 2680
BspANI GGCC 2 cut(s) 999, 1050
BspCNI CTCAG 4 cut(s) 277, 1848, 2497, 2502
BspEI TCCGGA 2 cut(s) 1728, 2099
BspLI GGNNCC 2 cut(s) 506, 1527
BspMAI CTGCAG 1 cut(s) 1150
BspMI ACCTGC 1 cut(s) 1207
BspPI GGATC 1 cut(s) 1713
BspT107I GGYRCC 1 cut(s) 1525
BspTI CTTAAG 1 cut(s) 1868
BspTNI GGTCTC 1 cut(s) 1073
BsrDI GCAATG 1 cut(s) 1649
BsrI ACTGG 2 cut(s) 1547, 2456
BssECI CCNNGG 8 cut(s) 217, 700, 763, 954, 1083, 1156, 1348, 2042
BssMI GATC 3 cut(s) 1359, 1468, 1705
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 5 cut(s) 217, 700, 763, 1083, 1348
Bst2UI CCWGG 4 cut(s) 955, 1158, 1613, 2044
Bst4CI ACNGT 4 cut(s) 244, 415, 1926, 2248
Bst6I CTCTTC 5 cut(s) 174, 441, 683, 705, 1856
BstACI GRCGYC 1 cut(s) 193
BstAFI CTTAAG 1 cut(s) 1868
BstBAI YACGTR 1 cut(s) 1520
BstC8I GCNNGC 2 cut(s) 92, 1090
BstDEI CTNAG 9 cut(s) 285, 389, 648, 1835, 1951, 2068, 2075, 2505, 2510
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 9 cut(s) 227, 799, 863, 1000, 1104, 1566, 1672, 2096, 2554
BstKTI GATC 3 cut(s) 1362, 1471, 1708
BstMBI GATC 3 cut(s) 1359, 1468, 1705
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 2515
BstNI CCWGG 4 cut(s) 955, 1158, 1613, 2044
BstNSI RCATGY 2 cut(s) 1092, 1386
BstSCI CCNGG 4 cut(s) 953, 1156, 1611, 2042
BstSFI CTRYAG 1 cut(s) 1146
BstV1I GCAGC 2 cut(s) 1132, 1978
BstV2I GAAGAC 3 cut(s) 525, 2051, 2486
BstX2I RGATCY 1 cut(s) 1705
BstYI RGATCY 1 cut(s) 1705
BsuI GTATCC 2 cut(s) 1379, 1694
BsuRI GGCC 2 cut(s) 999, 1050
BtgI CCRYGG 1 cut(s) 1083
BtgZI GCGATG 1 cut(s) 2447
BtrI CACGTC 1 cut(s) 2286
BtsCI GGATG 9 cut(s) 227, 799, 863, 1000, 1104, 1566, 1672, 2096, 2554
BtsIMutI CAGTG 1 cut(s) 2244
BveI ACCTGC 1 cut(s) 1207
Cac8I GCNNGC 2 cut(s) 92, 1090
Cfr13I GGNCC 2 cut(s) 504, 2654
CseI GACGC 2 cut(s) 182, 290
Csp6I GTAC 4 cut(s) 1103, 1526, 2072, 2569
CviQI GTAC 4 cut(s) 1103, 1526, 2072, 2569
DdeI CTNAG 9 cut(s) 285, 389, 648, 1835, 1951, 2068, 2075, 2505, 2510
DpnI GATC 3 cut(s) 1361, 1470, 1707
DpnII GATC 3 cut(s) 1359, 1468, 1705
DraI TTTAAA 1 cut(s) 1206
Eam1104I CTCTTC 5 cut(s) 174, 441, 683, 705, 1856
EarI CTCTTC 5 cut(s) 174, 441, 683, 705, 1856
Ecl136II GAGCTC 2 cut(s) 94, 1137
Eco130I CCWWGG 5 cut(s) 217, 700, 763, 1083, 1348
Eco24I GRGCYC 3 cut(s) 96, 745, 1139
Eco31I GGTCTC 1 cut(s) 1073
Eco32I GATATC 2 cut(s) 661, 1887
Eco47I GGWCC 2 cut(s) 504, 2654
Eco53kI GAGCTC 2 cut(s) 94, 1137
Eco57I CTGAAG 5 cut(s) 158, 1275, 1619, 2294, 2498
Eco88I CYCGRG 1 cut(s) 2318
EcoICRI GAGCTC 2 cut(s) 94, 1137
EcoRI GAATTC 3 cut(s) 1151, 1670, 1717
EcoRII CCWGG 4 cut(s) 953, 1156, 1611, 2042
EcoRV GATATC 2 cut(s) 661, 1887
EcoT14I CCWWGG 5 cut(s) 217, 700, 763, 1083, 1348
EcoT22I ATGCAT 2 cut(s) 71, 1431
EcoT38I GRGCYC 3 cut(s) 96, 745, 1139
ErhI CCWWGG 5 cut(s) 217, 700, 763, 1083, 1348
Esp3I CGTCTC 2 cut(s) 515, 519
FalI AAGNNNNNCTT 6 cut(s) 210, 242, 1997, 2029, 2571, 2603
FaqI GGGAC 4 cut(s) 818, 1587, 2199, 2618
FauI CCCGC 2 cut(s) 608, 900
FauNDI CATATG 1 cut(s) 1141
FblI GTMKAC 2 cut(s) 1816, 2413
Fnu4HI GCNGC 3 cut(s) 1146, 1802, 1967
FokI GGATG 9 cut(s) 234, 806, 870, 987, 1111, 1573, 1679, 2083, 2561
FriOI GRGCYC 3 cut(s) 96, 745, 1139
Fsp4HI GCNGC 3 cut(s) 1146, 1802, 1967
GluI GCNGC 3 cut(s) 1146, 1802, 1967
GsuI CTGGAG 1 cut(s) 1564
HaeIII GGCC 2 cut(s) 999, 1050
HapII CCGG 3 cut(s) 1678, 1729, 2100
HgaI GACGC 2 cut(s) 182, 290
Hin1I GRCGYC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 2011, 2516
HpaII CCGG 3 cut(s) 1678, 1729, 2100
HphI GGTGA 3 cut(s) 865, 1231, 2062
Hpy166II GTNNAC 4 cut(s) 186, 1788, 1817, 2414
Hpy8I GTNNAC 4 cut(s) 186, 1788, 1817, 2414
Hpy99I CGWCG 2 cut(s) 198, 248
HpyAV CCTTC 7 cut(s) 159, 367, 584, 1551, 1643, 2269, 2339
HpyCH4III ACNGT 4 cut(s) 244, 415, 1926, 2248
HpyCH4IV ACGT 4 cut(s) 75, 1128, 1519, 2285
HpyF10VI GCNNNNNNNGC 1 cut(s) 2515
HpyF3I CTNAG 9 cut(s) 285, 389, 648, 1835, 1951, 2068, 2075, 2505, 2510
HpySE526I ACGT 4 cut(s) 75, 1128, 1519, 2285
Hsp92I GRCGYC 1 cut(s) 193
Kpn2I TCCGGA 2 cut(s) 1728, 2099
KpnI GGTACC 1 cut(s) 1529
Kzo9I GATC 3 cut(s) 1359, 1468, 1705
LmnI GCTCC 5 cut(s) 5, 1213, 2044, 2305, 2442
Lsp1109I GCAGC 2 cut(s) 1132, 1978
LweI GCATC 5 cut(s) 78, 441, 848, 1472, 2454
MaeII ACGT 4 cut(s) 75, 1128, 1519, 2285
MaeIII GTNAC 2 cut(s) 415, 1115
MalI GATC 3 cut(s) 1361, 1470, 1707
MboI GATC 3 cut(s) 1359, 1468, 1705
MfeI CAATTG 1 cut(s) 1122
MflI RGATCY 1 cut(s) 1705
MhlI GDGCHC 3 cut(s) 96, 745, 1139
MlyI GAGTC 6 cut(s) 394, 661, 840, 2324, 2419, 2616
MmeI TCCRAC 4 cut(s) 771, 958, 1374, 1492
Mph1103I ATGCAT 2 cut(s) 71, 1431
MroI TCCGGA 2 cut(s) 1728, 2099
MroXI GAANNNNTTC 2 cut(s) 254, 1170
MseI TTAA 9 cut(s) 14, 1065, 1205, 1343, 1422, 1797, 1869, 2033, 2565
MslI CAYNNNNRTG 2 cut(s) 74, 131
MspCI CTTAAG 1 cut(s) 1868
MspI CCGG 3 cut(s) 1678, 1729, 2100
MspR9I CCNGG 4 cut(s) 955, 1158, 1613, 2044
MunI CAATTG 1 cut(s) 1122
Mva1269I GAATGC 1 cut(s) 1613
MvaI CCWGG 4 cut(s) 955, 1158, 1613, 2044
MwoI GCNNNNNNNGC 1 cut(s) 2515
NcoI CCATGG 1 cut(s) 1083
NdeI CATATG 1 cut(s) 1141
NdeII GATC 3 cut(s) 1359, 1468, 1705
NlaIV GGNNCC 2 cut(s) 506, 1527
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 2 cut(s) 71, 1431
NspI RCATGY 2 cut(s) 1092, 1386
PaeI GCATGC 1 cut(s) 1092
PaeR7I CTCGAG 1 cut(s) 2318
PaqCI CACCTGC 1 cut(s) 1207
PcsI WCGNNNNNNNCGW 2 cut(s) 236, 1125
PctI GAATGC 1 cut(s) 1613
PdmI GAANNNNTTC 2 cut(s) 254, 1170
PfeI GAWTC 7 cut(s) 46, 585, 670, 1308, 1646, 2093, 2528
PkrI GCNGC 3 cut(s) 1147, 1803, 1968
PleI GAGTC 6 cut(s) 393, 660, 839, 2324, 2418, 2616
PpsI GAGTC 6 cut(s) 393, 660, 839, 2324, 2418, 2616
Ppu21I YACGTR 1 cut(s) 1520
Psp124BI GAGCTC 2 cut(s) 96, 1139
Psp6I CCWGG 4 cut(s) 953, 1156, 1611, 2042
PspGI CCWGG 4 cut(s) 953, 1156, 1611, 2042
PspN4I GGNNCC 2 cut(s) 506, 1527
PspPI GGNCC 2 cut(s) 504, 2654
PstI CTGCAG 1 cut(s) 1150
PsuI RGATCY 1 cut(s) 1705
RsaI GTAC 4 cut(s) 1104, 1527, 2073, 2570
RsaNI GTAC 4 cut(s) 1103, 1526, 2072, 2569
RseI CAYNNNNRTG 2 cut(s) 74, 131
SacI GAGCTC 2 cut(s) 96, 1139
SaqAI TTAA 9 cut(s) 14, 1065, 1205, 1343, 1422, 1797, 1869, 2033, 2565
SatI GCNGC 3 cut(s) 1146, 1802, 1967
Sau3AI GATC 3 cut(s) 1359, 1468, 1705
Sau96I GGNCC 2 cut(s) 504, 2654
ScaI AGTACT 1 cut(s) 2073
SchI GAGTC 6 cut(s) 394, 661, 840, 2324, 2419, 2616
ScrFI CCNGG 4 cut(s) 955, 1158, 1613, 2044
SduI GDGCHC 3 cut(s) 96, 745, 1139
SfaNI GCATC 5 cut(s) 78, 441, 848, 1472, 2454
SfcI CTRYAG 1 cut(s) 1146
Sfr274I CTCGAG 1 cut(s) 2318
SinI GGWCC 2 cut(s) 504, 2654
SlaI CTCGAG 1 cut(s) 2318
SmiMI CAYNNNNRTG 2 cut(s) 74, 131
SmlI CTYRAG 5 cut(s) 57, 210, 396, 1868, 2318
SmoI CTYRAG 5 cut(s) 57, 210, 396, 1868, 2318
SpeI ACTAGT 2 cut(s) 2312, 2338
SphI GCATGC 1 cut(s) 1092
SsiI CCGC 4 cut(s) 615, 907, 1801, 2680
SstI GAGCTC 2 cut(s) 96, 1139
StyD4I CCNGG 4 cut(s) 953, 1156, 1611, 2042
StyI CCWWGG 5 cut(s) 217, 700, 763, 1083, 1348
TaaI ACNGT 4 cut(s) 244, 415, 1926, 2248
TaiI ACGT 4 cut(s) 78, 1131, 1522, 2288
TaqI TCGA 5 cut(s) 239, 246, 492, 2204, 2319
TaqII GACCGA 1 cut(s) 1802
TatI WGTACW 1 cut(s) 2071
TauI GCSGC 1 cut(s) 1804
TfiI GAWTC 7 cut(s) 46, 585, 670, 1308, 1646, 2093, 2528
Tru1I TTAA 9 cut(s) 14, 1065, 1205, 1343, 1422, 1797, 1869, 2033, 2565
Tru9I TTAA 9 cut(s) 14, 1065, 1205, 1343, 1422, 1797, 1869, 2033, 2565
TscAI CASTG 1 cut(s) 2251
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 1145, 1966
Tsp45I GTSAC 1 cut(s) 415
TspGWI ACGGA 2 cut(s) 537, 2615
TspRI CASTG 1 cut(s) 2251
Vha464I CTTAAG 1 cut(s) 1868
VpaK11BI GGWCC 2 cut(s) 504, 2654
XapI RAATTY 8 cut(s) 254, 776, 814, 1151, 1170, 1587, 1670, 1717
XbaI TCTAGA 1 cut(s) 884
XceI RCATGY 2 cut(s) 1092, 1386
XcmI CCANNNNNNNNNTGG 2 cut(s) 106, 974
XhoI CTCGAG 1 cut(s) 2318
XmiI GTMKAC 2 cut(s) 1816, 2413
XmnI GAANNNNTTC 2 cut(s) 254, 1170
ZrmI AGTACT 1 cut(s) 2073
Zsp2I ATGCAT 2 cut(s) 71, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.