Rh2DG623700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000363
Physical Location & Seq
Reverse (-)
85322812 .. 85326300
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG623700.1

Sequence Viewer

Length: 2721 bp
ATGGGTAACATCTTCACAGTCAACTTATCATGTGATGCCACTGTTTCTCGCTTCTTGGATTCAATTTTTCGACGAGCAGCATATGTACGTAAGCTCGAAACAAACCTTCAACATCTGAATACTTCCTTCAATGAATTGAAGTGTTTAAAGGATGACGTAAAGAGAAGGGTTGAGGTTGCTGAGCAGCAGCATCACATGAAGCAGTTAGCCCAAGTACAGAACTGGATTTTAAAGGTGGAGGAATCTATAGAGGCTCAAGTAGAGGAAGCTGTCAACAATAGCACTCAACAAATAGAGAAACTGTGTTGTGGAGGCTGTTGTTCAAAGAACTACATGTCAAGCTACAAGTATGGGGGGAAAGTGGCTAAAATGGTGGTGGAAATCGCTGACTTAAAGAGCAAGGGACTTTTTCCAGAGGTTGCTGAAAAATTGCCCGAACCTCCAATCAGTGAAAGACCTCTGGAGCCAACTGTGGGGTTGGATTCGATGCTTGACAAGGTTTGGAGACAGATTGAAGATGAAAATGTAGGAGTAATTGGTTTATACGGGATGGGAGGGGTAGGCAAGACCAACCTCCTCACCCAAATCCATAACAAATTCCAACACACTGATTTCGATCTTGCAATCTGGATAGTAGTCTCCAAGGACCTCAGACTCGGAGCAATTCAAGATAGAATTGGAGAAAAGATTGGCTTTCCAAAAGACACATGGGAGCTTAAAGATCCAGATGCAAAAGCCGAAGAAATCTCACGCTTCTTGTGCAAAAAAAAGTTTGTGTTATTGTTGGATGATCTATGGGAGCGGGTTGATATAACCAAAATCGGAGTTCCATTTCCTGATCGATACAATAAGTCCAAGCTAGTCTTCACAACTCGTTCTGAGGATGTGTGCGGTATTATGGATGCTCAACAGAAGATTTATGTGGAGTGTTTGCCATGGGACAAAGCGTGGAACTTGTTTCAGGAGAAGGTTGGCAAAGACGCACTTCTTATTCATGCAGATATTCCTAAACTTGCTGAAGCTGTCGCCAAAGAGTGTGGTGGTTTGCCGCTTGCACTAATTACAGTTGGTCGGATGATGTCTTGCAAGAAGACACCCCAAGAATGGAATCATGCGATCAAAGTACTGAAGAAATTTAGCTTCGAGTTTTCAGGTATGGGAGACCAGGTGTTCCCTCTCTTGAAATTCAGTTATGATAATTTTCCTAGTGAGAAAGTCAGATCATGCTTCTTGTACTGTGCTTTATTTCCTGAAGACTATCCCATACCCAAAGATGATTTAGCATGCTTTTGGATGTGTGAAAATATGTTAGATGAACATACTGATCTAGAAGACGCACGAGATGAGAGCTACCATATCATAGGTACTCTTCTCAATGCATGTATGCTAGAAGAGTGTAAAGAAGGTTGTGTAAAAATGCATGATATTGTTCGTGACATGGCGTTGTGGTTGGCTTGTGATCCTAAGAAAGCAGATGAGAGTTTTCTTGTGCATGCAGGCGCTGATTTGATTGAAGCACCAATTGCCGAAAAATGGAAGAACTCGAAAAGGGTATCATTGATGGCTAACCACATCAAAGAATTGGTTGAAAAACCAAACTCTCCATATCTGTTGACTTTGTTTCTCACGGGAAATCATCTGAAGATTATTGTTGCAGGCTTCTTTGCCTCCATGTCTAAGCTGCTAGTTTTAGATCTGTCTTCAAATCATGATCTAACCCAACTGCCACCAGGAGTTTCGAGCTTGATTTCACTACAGCATCTCAATTTGTCAAGCACTGGTATAAGAGAGTTGCCGATTGAGTTGAAGTGCTTAAAGAGGCTGACATATTTGAATTTTGAGTATACACCGAATCTTGATTCTCTTCCACCAACCATACTATCAAGTTTTTTGATGCTAAAAGTTCTGAGAATGGTACATTCTGGTACTTGTGATGAATGTAATCATTTTGATGATGAAAAAGTGATGGTAGAGGAATTGCATGGTTTGAAACACCTGGACTACTTGACTCTGGACATTAGAAGTACCTCTTGCTTCCAAAACTTCGTCAGCAACAAATTAGCGAAGTGCTGCACTCGAGCTCTACACCTCATGGGTTATGACAGTCATTGGAGCTCTCTTGATATATCATCCGTGGAGACAAAACATCTTGAGCAACTTAACATTAGGGGTTATCCTAATGTGGAAGATATAATAGTTGACAATGATTGGGCAGGAGGACGAGCATGTAACAATCCTCAGAACTCAATGATGAGAATCCAGAGCTGCTTCCTTGGCCTTCAATACATAATGGTACAAGACTGTGTAAATCTCAAGGACTTGACACAGCTCTGTTTTGTTCCAAATCTCCTATCTGTTGACGTGAGGAGATGCTCTAGAATGGAGACAATAATCAATTTGAGTAAACTGGGTGGAGATGCAAATGTGGCAAAAGAATTTAACCTGTTTGCGAAACTACTGTATCTTCAGTTCCAACAGCTACCAGCGTTGGAGAGCGTATACAAAACTGCTTTGCCCTTTCCATGTCTAAAGTGGATCCAAGTATATCAATGTCCAGCACTGAAGAAACTGCCACTCAACTCTAGCACTGCTCAAGGAGACGGATGCAATTTCATCCTAAGAGGAGAGCAGAAGTGGTGGGATGGGTTAGAGTGGGAGGACCAACTTGCACTAGATACTATTCGTCCTTGCTACGTGAGTTGGAATAGCCCCTACGATTAG

Protein Analysis

906

Amino Acids

103.11

Weight (kDa)

5.74

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 327 5.2e-46 NB-ARC domain
WHD_DRP PF23559 415 - 481 4.6e-08 Disease resistance protein Winged helix domain
LRR_8 PF13855 537 - 594 1.9e-07 Leucine rich repeat
LRR_14 PF23598 558 - 789 3.4e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 753 - 857 1.8e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 802
AccI GTMKAC 2 cut(s) 1844, 2499
AciI CCGC 3 cut(s) 802, 891, 1049
AclWI GGATC 4 cut(s) 716, 1454, 2530, 2543
AcsI RAATTY 5 cut(s) 596, 1133, 1184, 1834, 2435
AcuI CTGAAG 6 cut(s) 1038, 1148, 1272, 1661, 2450, 2582
AfaI GTAC 9 cut(s) 87, 216, 1125, 1235, 1366, 1917, 1927, 2026, 2295
AfiI CCNNNNNNNGG 3 cut(s) 473, 1104, 1533
AflIII ACRYGT 1 cut(s) 333
AjiI CACGTC 1 cut(s) 2362
AjnI CCWGG 3 cut(s) 1164, 1729, 1995
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
Alw21I GWGCWC 2 cut(s) 2083, 2117
Alw26I GTCTC 6 cut(s) 499, 643, 1155, 2132, 2378, 2592
AlwI GGATC 4 cut(s) 716, 1454, 2530, 2543
AlwNI CAGNNNCTG 1 cut(s) 1502
Ama87I CYCGRG 1 cut(s) 2076
AoxI GGCC 1 cut(s) 2275
ApeKI GCWGC 6 cut(s) 77, 184, 187, 1681, 2070, 2265
ApoI RAATTY 5 cut(s) 596, 1133, 1184, 1834, 2435
AspLEI GCGC 1 cut(s) 1502
AspS9I GGNCC 2 cut(s) 646, 2659
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 2076
AvaII GGWCC 2 cut(s) 646, 2659
BaeI ACNNNNGTAYC 2 cut(s) 2444, 2477
BamHI GGATCC 1 cut(s) 2535
BanII GRGCYC 2 cut(s) 2083, 2117
BauI CACGAG 1 cut(s) 1338
BbsI GAAGAC 5 cut(s) 856, 1097, 1260, 1338, 1692
Bbv12I GWGCWC 2 cut(s) 2083, 2117
BbvI GCAGC 6 cut(s) 89, 196, 199, 1668, 2057, 2252
BccI CCATC 4 cut(s) 544, 1555, 1960, 2636
BciT130I CCWGG 3 cut(s) 1166, 1731, 1997
BcoDI GTCTC 6 cut(s) 499, 643, 1155, 2132, 2378, 2592
BfaI CTAG 8 cut(s) 860, 1206, 1328, 1388, 1685, 2376, 2583, 2672
BfmI CTRYAG 2 cut(s) 246, 1754
BfoI RGCGCY 1 cut(s) 1503
BglII AGATCT 1 cut(s) 1693
BisI GCNGC 7 cut(s) 78, 185, 188, 1049, 1682, 2071, 2266
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 7 cut(s) 79, 186, 189, 1050, 1683, 2072, 2267
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 3 cut(s) 1166, 1731, 1997
Bme18I GGWCC 2 cut(s) 646, 2659
BmeT110I CYCGRG 1 cut(s) 2076
BmgBI CACGTC 1 cut(s) 2362
BmgT120I GGNCC 2 cut(s) 646, 2659
BmiI GGNNCC 2 cut(s) 465, 2537
BmrFI CCNGG 3 cut(s) 1166, 1731, 1997
BmrI ACTGGG 1 cut(s) 2417
BmuI ACTGGG 1 cut(s) 2417
BpiI GAAGAC 5 cut(s) 856, 1097, 1260, 1338, 1692
BpmI CTGGAG 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 4 cut(s) 240, 2171, 2297, 2577
Bsa29I ATCGAT 1 cut(s) 841
BsaAI YACGTR 2 cut(s) 89, 2695
BsaBI GATNNNNATC 2 cut(s) 615, 2255
BsaI GGTCTC 1 cut(s) 1155
BsaJI CCNNGG 4 cut(s) 642, 935, 2133, 2272
BsaXI ACNNNNNCTCC 2 cut(s) 1152, 1182
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 1104, 1533
Bse1I ACTGG 3 cut(s) 227, 1783, 2412
Bse8I GATNNNNATC 2 cut(s) 615, 2255
BseBI CCWGG 3 cut(s) 1166, 1731, 1997
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 4 cut(s) 642, 935, 2133, 2272
BseJI GATNNNNATC 2 cut(s) 615, 2255
BseLI CCNNNNNNNGG 3 cut(s) 473, 1104, 1533
BseMII CTCAG 5 cut(s) 171, 664, 870, 1898, 2252
BseNI ACTGG 3 cut(s) 227, 1783, 2412
BseRI GAGGAG 3 cut(s) 566, 2380, 2637
BseXI GCAGC 6 cut(s) 89, 196, 199, 1668, 2057, 2252
BsgI GTGCAG 1 cut(s) 2056
BshFI GGCC 1 cut(s) 2277
BshVI ATCGAT 1 cut(s) 841
BsiHKAI GWGCWC 2 cut(s) 2083, 2117
BsiHKCI CYCGRG 1 cut(s) 2076
BslFI GGGAC 2 cut(s) 417, 953
BslI CCNNNNNNNGG 3 cut(s) 473, 1104, 1533
BsmAI GTCTC 6 cut(s) 499, 643, 1155, 2132, 2378, 2592
BsmBI CGTCTC 1 cut(s) 2592
BsmFI GGGAC 2 cut(s) 417, 953
BsnI GGCC 1 cut(s) 2277
Bso31I GGTCTC 1 cut(s) 1155
BsoBI CYCGRG 1 cut(s) 2076
Bsp1286I GDGCHC 2 cut(s) 2083, 2117
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 935
BspACI CCGC 3 cut(s) 802, 891, 1049
BspANI GGCC 1 cut(s) 2277
BspCNI CTCAG 5 cut(s) 172, 663, 871, 1899, 2251
BspDI ATCGAT 1 cut(s) 841
BspHI TCATGA 1 cut(s) 1708
BspLI GGNNCC 2 cut(s) 465, 2537
BspPI GGATC 4 cut(s) 716, 1454, 2530, 2543
BspTNI GGTCTC 1 cut(s) 1155
BsrBI CCGCTC 1 cut(s) 802
BsrI ACTGG 3 cut(s) 227, 1783, 2412
BssECI CCNNGG 4 cut(s) 642, 935, 2133, 2272
BssNAI GTATAC 2 cut(s) 1845, 2500
BssSI CACGAG 1 cut(s) 1338
BssT1I CCWWGG 3 cut(s) 642, 935, 2272
Bst1107I GTATAC 2 cut(s) 1845, 2500
Bst2BI CACGAG 1 cut(s) 1338
Bst2UI CCWGG 3 cut(s) 1166, 1731, 1997
Bst4CI ACNGT 9 cut(s) 19, 43, 303, 472, 1066, 1238, 2105, 2303, 2460
Bst6I CTCTTC 3 cut(s) 1374, 1386, 1869
BstAPI GCANNNNNTGC 1 cut(s) 1523
BstBAI YACGTR 2 cut(s) 89, 2695
BstC8I GCNNGC 5 cut(s) 1053, 1285, 1494, 1498, 1657
BstDEI CTNAG 8 cut(s) 180, 650, 879, 1464, 1677, 1907, 2238, 2618
BstDSI CCRYGG 2 cut(s) 935, 2133
BstH2I RGCGCY 1 cut(s) 1503
BstHHI GCGC 1 cut(s) 1502
BstMAI GTCTC 6 cut(s) 499, 643, 1155, 2132, 2378, 2592
BstMWI GCNNNNNNNGC 4 cut(s) 759, 1523, 2274, 2426
BstNI CCWGG 3 cut(s) 1166, 1731, 1997
BstNSI RCATGY 5 cut(s) 337, 1287, 1383, 1496, 2229
BstSCI CCNGG 3 cut(s) 1164, 1729, 1995
BstSFI CTRYAG 2 cut(s) 246, 1754
BstSNI TACGTA 1 cut(s) 89
BstV1I GCAGC 6 cut(s) 89, 196, 199, 1668, 2057, 2252
BstV2I GAAGAC 5 cut(s) 856, 1097, 1260, 1338, 1692
BstX2I RGATCY 3 cut(s) 721, 1693, 2535
BstYI RGATCY 3 cut(s) 721, 1693, 2535
BstZ17I GTATAC 2 cut(s) 1845, 2500
Bsu15I ATCGAT 1 cut(s) 841
BsuRI GGCC 1 cut(s) 2277
BsuTUI ATCGAT 1 cut(s) 841
BtgI CCRYGG 2 cut(s) 935, 2133
BtrI CACGTC 1 cut(s) 2362
BtsI GCAGTG 1 cut(s) 2586
BtsIMutI CAGTG 6 cut(s) 39, 454, 606, 1776, 2558, 2586
Cac8I GCNNGC 5 cut(s) 1053, 1285, 1494, 1498, 1657
CaiI CAGNNNCTG 1 cut(s) 1502
CciI TCATGA 1 cut(s) 1708
CfoI GCGC 1 cut(s) 1502
Cfr13I GGNCC 2 cut(s) 646, 2659
ClaI ATCGAT 1 cut(s) 841
CseI GACGC 2 cut(s) 989, 1343
CsiI ACCWGGT 1 cut(s) 1164
Csp6I GTAC 9 cut(s) 86, 215, 1124, 1234, 1365, 1916, 1926, 2025, 2294
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviQI GTAC 9 cut(s) 86, 215, 1124, 1234, 1365, 1916, 1926, 2025, 2294
DdeI CTNAG 8 cut(s) 180, 650, 879, 1464, 1677, 1907, 2238, 2618
DraI TTTAAA 2 cut(s) 147, 231
Eam1104I CTCTTC 3 cut(s) 1374, 1386, 1869
EarI CTCTTC 3 cut(s) 1374, 1386, 1869
Ecl136II GAGCTC 2 cut(s) 2081, 2115
Eco105I TACGTA 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 642, 935, 2272
Eco24I GRGCYC 2 cut(s) 2083, 2117
Eco31I GGTCTC 1 cut(s) 1155
Eco47I GGWCC 2 cut(s) 646, 2659
Eco53kI GAGCTC 2 cut(s) 2081, 2115
Eco57I CTGAAG 6 cut(s) 1038, 1148, 1272, 1661, 2450, 2582
Eco88I CYCGRG 1 cut(s) 2076
EcoICRI GAGCTC 2 cut(s) 2081, 2115
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 1164, 1729, 1995
EcoT14I CCWWGG 3 cut(s) 642, 935, 2272
EcoT22I ATGCAT 2 cut(s) 1381, 1422
EcoT38I GRGCYC 2 cut(s) 2083, 2117
ErhI CCWWGG 3 cut(s) 642, 935, 2272
Esp3I CGTCTC 1 cut(s) 2592
FalI AAGNNNNNCTT 8 cut(s) 677, 709, 848, 880, 969, 1001, 2014, 2046
FaqI GGGAC 2 cut(s) 417, 953
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 82
FblI GTMKAC 2 cut(s) 1844, 2499
Fnu4HI GCNGC 7 cut(s) 78, 185, 188, 1049, 1682, 2071, 2266
FriOI GRGCYC 2 cut(s) 2083, 2117
Fsp4HI GCNGC 7 cut(s) 78, 185, 188, 1049, 1682, 2071, 2266
FspBI CTAG 8 cut(s) 860, 1206, 1328, 1388, 1685, 2376, 2583, 2672
GlaI GCGC 1 cut(s) 1501
GluI GCNGC 7 cut(s) 78, 185, 188, 1049, 1682, 2071, 2266
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 1 cut(s) 1503
HaeIII GGCC 1 cut(s) 2277
HgaI GACGC 2 cut(s) 989, 1343
HhaI GCGC 1 cut(s) 1502
Hin6I GCGC 1 cut(s) 1500
HinP1I GCGC 1 cut(s) 1500
HincII GTYRAC 5 cut(s) 22, 274, 1614, 2200, 2359
HindII GTYRAC 5 cut(s) 22, 274, 1614, 2200, 2359
HinfI GANTC 9 cut(s) 59, 242, 482, 654, 1108, 1852, 1859, 2008, 2256
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 8 cut(s) 22, 274, 1614, 1845, 2200, 2359, 2405, 2500
Hpy8I GTNNAC 8 cut(s) 22, 274, 1614, 1845, 2200, 2359, 2405, 2500
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 6 cut(s) 116, 136, 159, 961, 1397, 2288
HpyCH4III ACNGT 9 cut(s) 19, 43, 303, 472, 1066, 1238, 2105, 2303, 2460
HpyCH4IV ACGT 4 cut(s) 88, 156, 2361, 2694
HpyF10VI GCNNNNNNNGC 4 cut(s) 759, 1523, 2274, 2426
HpyF3I CTNAG 8 cut(s) 180, 650, 879, 1464, 1677, 1907, 2238, 2618
HpySE526I ACGT 4 cut(s) 88, 156, 2361, 2694
HspAI GCGC 1 cut(s) 1500
LmnI GCTCC 5 cut(s) 463, 659, 712, 799, 2112
Lsp1109I GCAGC 6 cut(s) 89, 196, 199, 1668, 2057, 2252
MabI ACCWGGT 1 cut(s) 1164
MaeI CTAG 8 cut(s) 860, 1206, 1328, 1388, 1685, 2376, 2583, 2672
MaeII ACGT 4 cut(s) 88, 156, 2361, 2694
MaeIII GTNAC 3 cut(s) 5, 1433, 2228
MbiI CCGCTC 1 cut(s) 802
MfeI CAATTG 1 cut(s) 1521
MflI RGATCY 3 cut(s) 721, 1693, 2535
MhlI GDGCHC 2 cut(s) 2083, 2117
MlyI GAGTC 2 cut(s) 648, 2002
MmeI TCCRAC 7 cut(s) 459, 625, 765, 1052, 2469, 2497, 2681
Mph1103I ATGCAT 2 cut(s) 1381, 1422
MseI TTAA 7 cut(s) 146, 230, 392, 717, 1814, 2160, 2439
MslI CAYNNNNRTG 1 cut(s) 1950
MspR9I CCNGG 3 cut(s) 1166, 1731, 1997
MunI CAATTG 1 cut(s) 1521
MvaI CCWGG 3 cut(s) 1166, 1731, 1997
MwoI GCNNNNNNNGC 4 cut(s) 759, 1523, 2274, 2426
NcoI CCATGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 465, 2537
NmuCI GTSAC 1 cut(s) 1433
NsiI ATGCAT 2 cut(s) 1381, 1422
NspI RCATGY 5 cut(s) 337, 1287, 1383, 1496, 2229
PaeI GCATGC 2 cut(s) 1287, 1496
PaeR7I CTCGAG 1 cut(s) 2076
PagI TCATGA 1 cut(s) 1708
PciI ACATGT 1 cut(s) 333
PfeI GAWTC 7 cut(s) 59, 242, 482, 1108, 1852, 1859, 2256
PkrI GCNGC 7 cut(s) 79, 186, 189, 1050, 1683, 2072, 2267
PleI GAGTC 2 cut(s) 648, 2002
PpsI GAGTC 2 cut(s) 648, 2002
Ppu21I YACGTR 2 cut(s) 89, 2695
PpuMI RGGWCCY 1 cut(s) 646
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 2 cut(s) 2083, 2117
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 1164, 1729, 1995
PspGI CCWGG 3 cut(s) 1164, 1729, 1995
PspN4I GGNNCC 2 cut(s) 465, 2537
PspPI GGNCC 2 cut(s) 646, 2659
PspPPI RGGWCCY 1 cut(s) 646
PspXI VCTCGAGB 1 cut(s) 2076
PsrI GAACNNNNNNTAC 2 cut(s) 2453, 2485
PstNI CAGNNNCTG 1 cut(s) 1502
PsuI RGATCY 3 cut(s) 721, 1693, 2535
RsaI GTAC 9 cut(s) 87, 216, 1125, 1235, 1366, 1917, 1927, 2026, 2295
RsaNI GTAC 9 cut(s) 86, 215, 1124, 1234, 1365, 1916, 1926, 2025, 2294
RseI CAYNNNNRTG 1 cut(s) 1950
SacI GAGCTC 2 cut(s) 2083, 2117
SaqAI TTAA 7 cut(s) 146, 230, 392, 717, 1814, 2160, 2439
SatI GCNGC 7 cut(s) 78, 185, 188, 1049, 1682, 2071, 2266
Sau96I GGNCC 2 cut(s) 646, 2659
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 2 cut(s) 648, 2002
ScrFI CCNGG 3 cut(s) 1166, 1731, 1997
SduI GDGCHC 2 cut(s) 2083, 2117
SexAI ACCWGGT 1 cut(s) 1164
SfcI CTRYAG 2 cut(s) 246, 1754
Sfr274I CTCGAG 1 cut(s) 2076
SinI GGWCC 2 cut(s) 646, 2659
SlaI CTCGAG 1 cut(s) 2076
SmiMI CAYNNNNRTG 1 cut(s) 1950
SmlI CTYRAG 5 cut(s) 255, 2076, 2150, 2312, 2592
SmoI CTYRAG 5 cut(s) 255, 2076, 2150, 2312, 2592
SnaBI TACGTA 1 cut(s) 89
SphI GCATGC 2 cut(s) 1287, 1496
SsiI CCGC 3 cut(s) 802, 891, 1049
SspMI CTAG 8 cut(s) 860, 1206, 1328, 1388, 1685, 2376, 2583, 2672
SstI GAGCTC 2 cut(s) 2083, 2117
StyD4I CCNGG 3 cut(s) 1164, 1729, 1995
StyI CCWWGG 3 cut(s) 642, 935, 2272
TaaI ACNGT 9 cut(s) 19, 43, 303, 472, 1066, 1238, 2105, 2303, 2460
TaiI ACGT 4 cut(s) 91, 159, 2364, 2697
TaqI TCGA 9 cut(s) 70, 96, 485, 615, 841, 1143, 1544, 1739, 2077
TatI WGTACW 3 cut(s) 214, 1123, 1233
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 7 cut(s) 59, 242, 482, 1108, 1852, 1859, 2256
Tru1I TTAA 7 cut(s) 146, 230, 392, 717, 1814, 2160, 2439
Tru9I TTAA 7 cut(s) 146, 230, 392, 717, 1814, 2160, 2439
TscAI CASTG 6 cut(s) 46, 454, 613, 1783, 2565, 2593
TseFI GTSAC 1 cut(s) 1433
TseI GCWGC 6 cut(s) 77, 184, 187, 1681, 2070, 2265
Tsp45I GTSAC 1 cut(s) 1433
TspDTI ATGAA 8 cut(s) 147, 212, 534, 983, 1329, 1950, 1971, 2602
TspGWI ACGGA 2 cut(s) 2122, 2616
TspRI CASTG 6 cut(s) 46, 454, 613, 1783, 2565, 2593
VpaK11BI GGWCC 2 cut(s) 646, 2659
XapI RAATTY 5 cut(s) 596, 1133, 1184, 1834, 2435
XbaI TCTAGA 2 cut(s) 1327, 2375
XceI RCATGY 5 cut(s) 337, 1287, 1383, 1496, 2229
XcmI CCANNNNNNNNNTGG 2 cut(s) 705, 2529
XhoI CTCGAG 1 cut(s) 2076
XmiI GTMKAC 2 cut(s) 1844, 2499
XspI CTAG 8 cut(s) 860, 1206, 1328, 1388, 1685, 2376, 2583, 2672
ZrmI AGTACT 1 cut(s) 1125
Zsp2I ATGCAT 2 cut(s) 1381, 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.