Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000363

Physical Location & Seq

Genomic Coordinates Reverse (-)

82959516 .. 82959746

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG600600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGATGCTCAACAGAAGATTTATGTGGAGTGTTTGCCATGGGACAAAGCGTGGAACTTGTTTCAGGAGAAGGTTGGCAAAGACGCACTTCTTATTCATGCAGATATTCCTAAACTTGCTGAATCTGTCGCAAAAGAGTGTGGTGGTTTGCCGCTTGCACTAATTACAGTTGGTCGGATGATGAGAGCAAGAAGACACCCCAAGAATGGAATCATGCGATCAAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

76

Amino Acids

8.65

Weight (kDa)

9.51

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca	FvH4_6g30050 FvH4_6g48220
malus_domestica	MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica	Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis	pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis	RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata	RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora	Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa	Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha	Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana	Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	10, 183
BseLI	CCNNNNNNNGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	10, 183
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	10, 183
Cac8I	GCNNGC	1 cut(s)	156
CseI	GACGC	1 cut(s)	92
CviAII	CATG	3 cut(s)	39, 98, 214
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	3 cut(s)	42, 101, 217
FaiI	YATR	4 cut(s)	24, 40, 99, 215
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	38, 97, 213
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	2 cut(s)	17, 190
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	42, 101, 217
HinfI	GANTC	2 cut(s)	122, 210
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	101, 158
Hsp92II	CATG	3 cut(s)	42, 101, 217
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	1 cut(s)	50
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	2 cut(s)	28, 204
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	42, 101, 217
PfeI	GAWTC	2 cut(s)	122, 210
PkrI	GCNGC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	218
SetI	ASST	1 cut(s)	75
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	122, 210
TspDTI	ATGAA	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.