Rh2CG343300

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000363
Physical Location & Seq
Forward (+)
46159406 .. 46160758
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG343300.1

Sequence Viewer

Length: 1353 bp
ATGATGAATGAGTATGCTGATATAGAGGAAGCTTTAAACCAAGGGTACGATATCATAGGTACTCTTGTTAATGCGTGTCTGCTGGATGATATAAAAGGCAATGTAAAGATGCATGATATGATTCGTGAAATGGCATTGTGGTTAGCTTGTGAATTGGAAGAAACAAAAGACAATTTCCTGGTTCAATCAGGTTCTCGTTTGACTGCAGTACCTGATGTTGAGAAATGGGTGGCTGCCAAAAGAATGTCATTAATGAGCAATGATATTGAGAATCTTGGAGAAGCACCTTCATGCTCCAACCTACTTTCATTGTTTCTCAGTAGTAATCGTTTGAAGAGTATTTCAGAAGATTTCTTCAGTTCTATGGGCAACCTACGAGTTCTGGACTTGTCAAGAAACAATGGCATAACTGATTTGCCATCCGGAATATCAGCATTGGTTTCATTGCAGTATCTGGATCTATCAGAGACAAGCATCAGAGCGTTGCCAATTGAAATGAAGGCTTTGGTGAAGCTAATATATCTCAACTTGGAATTTACTAATGAACTTGTTGTGATTCCGCAAAATCTCATATCCAGCTTCTCAAAGCTTAGAGTTTTGAGATTGTACAACTGTGGTTCTTGCAATAGTGTTCTTGTTGGGGTTAATGAGCATCTGGGACAGGAACTGCAGTGTTTGATGCACTTGGAAATGTTGACCTTTACCATACAGAATCCTTCAACTTTCAAAAAGTTTCTGACCTACAAAAAGTTGCTGAGCTGCACTAAATTTCTGTGCTTCGAGGGTTTGAACATCCTTGATATATCATCTCTGATTCACATGGAGTTGAAGTCTCTTATCATTAACAGTTGTGATAGTTTGGAGTGCTGCAACTTAAAGGTCCAAAGCAAAAGTTTCTTCACCCACCTACAATTTGTGGATGTACGGAGTTGTCCCAATCTGACAGACTTAACATGGCTCATTTTTGCTCACAAGCTTAAGACCCTATCTGTGGGCTCATGCTCTAACTTGGAAGTATTAATACGACATGAGAAATTGGGTGAGTTAGTGACGAGGTTAGAAGATCTCAATCCTTTTGCCAATGTTGACAAAATGATATTGACAGACCTGCCAGAATTGGAGAGCATATATGGAGGGCGTACTTTGCCTTTTCCATATTTAAAGAGAATTAAAGTCCTTAACTGTCAAAAACTAAAGAGGCTTCCCCTCAACTTCAGCAGTGTTCCTAGACGCAATATCATTATTACCGGAAAAGAAGACTGGTGGAGTCTGTTAGATTGGGAGGATGAAGATACTCGAAATGTTTTTCTTCCCTGTTTTAGACCATACATTGACACAAGCCATTTGCTTTAA

Protein Analysis

450

Amino Acids

51.21

Weight (kDa)

5.53

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 83 - 134 4.6e-07 Leucine rich repeat
LRR_14 PF23598 85 - 321 7.2e-12 Leucine-rich repeat region
LRR_8 PF13855 100 - 158 2.3e-11 Leucine rich repeat
LRR_4 PF12799 100 - 140 3e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 124 - 180 5.1e-07 Leucine rich repeat
LRR_4 PF12799 124 - 160 1.2e-07 Leucine Rich repeats (2 copies)
LRR_RPS2 PF23247 283 - 401 2.9e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1116
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 1 cut(s) 560
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 2 cut(s) 533, 767
AcuI CTGAAG 2 cut(s) 340, 1198
AfaI GTAC 6 cut(s) 47, 61, 210, 608, 924, 1141
AfiI CCNNNNNNNGG 1 cut(s) 991
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 7 cut(s) 185, 334, 494, 720, 727, 790, 829
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 7 cut(s) 32, 146, 514, 579, 589, 759, 976
AluI AGCT 7 cut(s) 32, 146, 514, 579, 589, 759, 976
Alw26I GTCTC 2 cut(s) 461, 837
AlwI GGATC 1 cut(s) 465
AlwNI CAGNNNCTG 3 cut(s) 212, 454, 667
Aor13HI TCCGGA 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 233, 759, 867
ApoI RAATTY 2 cut(s) 533, 767
AseI ATTAAT 2 cut(s) 251, 1019
AspS9I GGNCC 1 cut(s) 880
AsuHPI GGTGA 3 cut(s) 520, 892, 1052
AvaII GGWCC 1 cut(s) 880
BaeI ACNNNNGTAYC 4 cut(s) 51, 84, 192, 225
BanII GRGCYC 1 cut(s) 998
BarI GAAGNNNNNNTAC 2 cut(s) 1005, 1037
BbsI GAAGAC 1 cut(s) 1263
BbvI GCAGC 3 cut(s) 220, 746, 854
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 461, 837
BfaI CTAG 1 cut(s) 1227
BfmI CTRYAG 2 cut(s) 204, 668
BfrI CTTAAG 1 cut(s) 977
BfuAI ACCTGC 1 cut(s) 1116
BglII AGATCT 1 cut(s) 1063
BisI GCNGC 3 cut(s) 234, 760, 868
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 3 cut(s) 235, 761, 869
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 880
BmgT120I GGNCC 1 cut(s) 880
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 4 cut(s) 99, 483, 661, 669
BpiI GAAGAC 1 cut(s) 1263
Bpu1102I GCTNAGC 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 1068
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 2 cut(s) 422, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 991
Bse1I ACTGG 1 cut(s) 1265
Bse3DI GCAATG 3 cut(s) 106, 265, 443
Bse8I GATNNNNATC 1 cut(s) 1068
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 5 cut(s) 91, 419, 792, 925, 1291
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 1 cut(s) 991
BseMI GCAATG 3 cut(s) 106, 265, 443
BseMII CTCAG 2 cut(s) 331, 746
BseNI ACTGG 1 cut(s) 1265
BseXI GCAGC 3 cut(s) 220, 746, 854
BsgI GTGCAG 1 cut(s) 745
BsiSI CCGG 2 cut(s) 423, 1248
BslFI GGGAC 2 cut(s) 672, 918
BslI CCNNNNNNNGG 1 cut(s) 991
BsmAI GTCTC 2 cut(s) 461, 837
BsmFI GGGAC 2 cut(s) 672, 918
Bsp1286I GDGCHC 1 cut(s) 998
Bsp13I TCCGGA 1 cut(s) 422
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 2 cut(s) 457, 1063
Bsp1720I GCTNAGC 1 cut(s) 755
BspACI CCGC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 330, 747
BspEI TCCGGA 1 cut(s) 422
BspMAI CTGCAG 2 cut(s) 208, 672
BspMI ACCTGC 1 cut(s) 1116
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 977
BsrDI GCAATG 3 cut(s) 106, 265, 443
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 1265
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 457, 1063
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 614, 848, 1184
Bst6I CTCTTC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 606
BstDEI CTNAG 3 cut(s) 317, 590, 755
BstF5I GGATG 5 cut(s) 91, 419, 792, 925, 1291
BstKTI GATC 2 cut(s) 460, 1066
BstMAI GTCTC 2 cut(s) 461, 837
BstMBI GATC 2 cut(s) 457, 1063
BstMWI GCNNNNNNNGC 1 cut(s) 1144
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 204, 668
BstV1I GCAGC 3 cut(s) 220, 746, 854
BstV2I GAAGAC 1 cut(s) 1263
BstX2I RGATCY 2 cut(s) 457, 1063
BstYI RGATCY 2 cut(s) 457, 1063
BtsCI GGATG 5 cut(s) 91, 419, 792, 925, 1291
BtsI GCAGTG 2 cut(s) 677, 1225
BtsIMutI CAGTG 2 cut(s) 677, 1225
BveI ACCTGC 1 cut(s) 1116
CaiI CAGNNNCTG 3 cut(s) 212, 454, 667
Cfr13I GGNCC 1 cut(s) 880
CseI GACGC 1 cut(s) 1239
Csp6I GTAC 6 cut(s) 46, 60, 209, 607, 923, 1140
CviAII CATG 6 cut(s) 113, 291, 820, 954, 999, 1028
CviQI GTAC 6 cut(s) 46, 60, 209, 607, 923, 1140
DdeI CTNAG 3 cut(s) 317, 590, 755
DpnI GATC 2 cut(s) 459, 1065
DpnII GATC 2 cut(s) 457, 1063
DraI TTTAAA 2 cut(s) 36, 1161
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 998
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 880
Eco57I CTGAAG 2 cut(s) 340, 1198
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 6 cut(s) 116, 294, 823, 957, 1002, 1031
FaqI GGGAC 2 cut(s) 672, 918
FatI CATG 6 cut(s) 112, 290, 819, 953, 998, 1027
Fnu4HI GCNGC 3 cut(s) 234, 760, 868
FokI GGATG 5 cut(s) 98, 406, 779, 932, 1298
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 3 cut(s) 234, 760, 868
FspBI CTAG 1 cut(s) 1227
GluI GCNGC 3 cut(s) 234, 760, 868
HapII CCGG 2 cut(s) 423, 1248
HgaI GACGC 1 cut(s) 1239
Hin1II CATG 6 cut(s) 116, 294, 823, 957, 1002, 1031
HincII GTYRAC 2 cut(s) 696, 1087
HindII GTYRAC 2 cut(s) 696, 1087
HindIII AAGCTT 3 cut(s) 30, 587, 974
HinfI GANTC 6 cut(s) 121, 271, 556, 712, 814, 1267
HpaII CCGG 2 cut(s) 423, 1248
HphI GGTGA 3 cut(s) 520, 892, 1052
Hpy166II GTNNAC 2 cut(s) 696, 1087
Hpy188I TCNGA 6 cut(s) 346, 466, 479, 738, 813, 942
Hpy188III TCNNGA 5 cut(s) 125, 383, 393, 423, 455
Hpy8I GTNNAC 2 cut(s) 696, 1087
HpyAV CCTTC 3 cut(s) 297, 493, 726
HpyCH4III ACNGT 3 cut(s) 614, 848, 1184
HpyCH4V TGCA 8 cut(s) 112, 206, 448, 624, 670, 682, 762, 870
HpyF10VI GCNNNNNNNGC 1 cut(s) 1144
HpyF3I CTNAG 3 cut(s) 317, 590, 755
Hsp92II CATG 6 cut(s) 116, 294, 823, 957, 1002, 1031
Kpn2I TCCGGA 1 cut(s) 422
Kzo9I GATC 2 cut(s) 457, 1063
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 3 cut(s) 220, 746, 854
LweI GCATC 4 cut(s) 99, 483, 661, 669
MaeI CTAG 1 cut(s) 1227
MaeIII GTNAC 1 cut(s) 1048
MalI GATC 2 cut(s) 459, 1065
MboI GATC 2 cut(s) 457, 1063
MboII GAAGA 9 cut(s) 170, 346, 346, 359, 889, 1073, 1268, 1301, 1301
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 457, 1063
MhlI GDGCHC 1 cut(s) 998
MluCI AATT 9 cut(s) 152, 172, 489, 533, 767, 911, 1034, 1115, 1167
MlyI GAGTC 1 cut(s) 1276
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 19, 775, 1047, 1127, 1191, 1217, 1276
Mph1103I ATGCAT 1 cut(s) 114
MroI TCCGGA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 289
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 2 cut(s) 423, 1248
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 1144
NdeII GATC 2 cut(s) 457, 1063
NlaIII CATG 6 cut(s) 116, 294, 823, 957, 1002, 1031
NmuCI GTSAC 1 cut(s) 1048
NsiI ATGCAT 1 cut(s) 114
PfeI GAWTC 5 cut(s) 121, 271, 556, 712, 814
PkrI GCNGC 3 cut(s) 235, 761, 869
PleI GAGTC 1 cut(s) 1275
PpsI GAGTC 1 cut(s) 1275
PshBI ATTAAT 2 cut(s) 251, 1019
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 880
PstI CTGCAG 2 cut(s) 208, 672
PstNI CAGNNNCTG 3 cut(s) 212, 454, 667
PsuI RGATCY 2 cut(s) 457, 1063
RsaI GTAC 6 cut(s) 47, 61, 210, 608, 924, 1141
RsaNI GTAC 6 cut(s) 46, 60, 209, 607, 923, 1140
RseI CAYNNNNRTG 1 cut(s) 289
SatI GCNGC 3 cut(s) 234, 760, 868
Sau3AI GATC 2 cut(s) 457, 1063
Sau96I GGNCC 1 cut(s) 880
SchI GAGTC 1 cut(s) 1276
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 4 cut(s) 99, 483, 661, 669
SfcI CTRYAG 2 cut(s) 204, 668
SinI GGWCC 1 cut(s) 880
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 9 cut(s) 152, 172, 489, 533, 767, 911, 1034, 1115, 1167
SsiI CCGC 1 cut(s) 560
SspMI CTAG 1 cut(s) 1227
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 3 cut(s) 614, 848, 1184
TaqI TCGA 2 cut(s) 780, 1297
TasI AATT 9 cut(s) 152, 172, 489, 533, 767, 911, 1034, 1115, 1167
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 5 cut(s) 121, 271, 556, 712, 814
TscAI CASTG 2 cut(s) 677, 1225
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 3 cut(s) 233, 759, 867
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 7 cut(s) 20, 279, 297, 432, 512, 558, 1302
TspGWI ACGGA 1 cut(s) 940
TspRI CASTG 2 cut(s) 677, 1225
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 880
VspI ATTAAT 2 cut(s) 251, 1019
XapI RAATTY 2 cut(s) 533, 767
XspI CTAG 1 cut(s) 1227
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.