Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000363

Physical Location & Seq

Genomic Coordinates Reverse (-)

76010544 .. 76011236

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG581500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGAGGGGTCGGCAAGACCAACCTCCTCACCCAAATCCATAACAAATTCCAACACACTGATTTCGATCTTGCAATCTGGATAGTAGTCTCCAAGGACCTCAGACTCGGAGCAATTCAAGATAGAATTGGAGAAAAGATTGGTTTTCCAAAAGACACATGGAAGCTTAATTTGCTTAAAGATCCAGATGCAAAATTCGAATCAATTTCACGCTTCTTGAGCAAAAAAAAAAAGTTTGTGTTATTGTTGGATGATCTATGGGAGCGGGTTGATATAACCAAAATCGGAGTTCCATTTCCTGATCGATACAATAAGTCCAAGCTAGTCTTCACAACTCGTTCTGAGGATGTGTGCGGTATTATGGATGCTCAACAGAAGATTTATGTGGAGTGTTTGCCATGGGACAAAGCGTGGAACTTGTTTCAGGAGGTTGGCAAAGACGCACTTCTTATTCATGCAGATATTCCTAAACTTGCTGAATCTGTCGCAAAAGAGTGTGGTGGTTTGCCGCTTGCACTAATTACAGTTGGTCGGATGATGTCTTGCAAGAAGACACCCCAAGAATGGAATCATGTGATCAAAGTATTGAAGAAATATATTTATCTTCGAGTTTTCAGGTTTGGGAGACCAGGTGTTCCCTCTCTTGAAATTCAGTTACGGATCATGCTTCTTGTACTGTGCTTTATTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

230

Amino Acids

26.42

Weight (kDa)

9.37

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 146	3.1e-36	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca	FvH4_6g30050 FvH4_6g48220
malus_domestica	MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica	Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis	pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis	RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata	RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora	Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa	Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha	Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana	Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	3 cut(s)	265, 354, 509
AclWI	GGATC	2 cut(s)	176, 668
AcsI	RAATTY	3 cut(s)	47, 194, 648
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	119, 589, 647
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	166, 322
AluI	AGCT	2 cut(s)	166, 322
Alw26I	GTCTC	2 cut(s)	94, 619
AlwI	GGATC	2 cut(s)	176, 668
ApoI	RAATTY	3 cut(s)	47, 194, 648
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	319, 557
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	94, 619
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	178, 355
BpiI	GAAGAC	2 cut(s)	319, 557
Bpu14I	TTCGAA	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	2 cut(s)	93, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	93, 398
BseGI	GGATG	4 cut(s)	256, 352, 370, 540
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	115, 333
BseRI	GAGGAG	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	2 cut(s)	94, 619
BsmFI	GGGAC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	198
Bsp143I	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	3 cut(s)	265, 354, 509
BspCNI	CTCAG	2 cut(s)	114, 334
BspDI	ATCGAT	1 cut(s)	304
BspPI	GGATC	2 cut(s)	176, 668
BspT104I	TTCGAA	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	93, 398
BssMI	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
BssT1I	CCWWGG	2 cut(s)	93, 398
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	526, 678
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	101, 342
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	256, 352, 370, 540
BstKTI	GATC	6 cut(s)	70, 184, 256, 304, 579, 663
BstMAI	GTCTC	2 cut(s)	94, 619
BstMBI	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 219
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstV2I	GAAGAC	2 cut(s)	319, 557
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	4 cut(s)	256, 352, 370, 540
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	5 cut(s)	159, 399, 455, 572, 664
CviJI	RGCY	2 cut(s)	166, 322
CviKI_1	RGCY	2 cut(s)	166, 322
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	2 cut(s)	101, 342
DpnI	GATC	6 cut(s)	69, 183, 255, 303, 578, 662
DpnII	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
Eco130I	CCWWGG	2 cut(s)	93, 398
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	93, 398
ErhI	CCWWGG	2 cut(s)	93, 398
FaeI	CATG	5 cut(s)	162, 402, 458, 575, 667
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 429, 461
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	5 cut(s)	158, 398, 454, 571, 663
FauI	CCCGC	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	4 cut(s)	263, 359, 377, 547
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	509
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	162, 402, 458, 575, 667
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	4 cut(s)	105, 200, 479, 568
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	5 cut(s)	104, 110, 287, 343, 534
Hpy188III	TCNNGA	8 cut(s)	79, 119, 185, 217, 299, 425, 644, 690
HpyCH4III	ACNGT	2 cut(s)	526, 678
HpyCH4V	TGCA	5 cut(s)	74, 191, 458, 515, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 219
HpyF3I	CTNAG	2 cut(s)	101, 342
Hsp92II	CATG	5 cut(s)	162, 402, 458, 575, 667
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
LmnI	GCTCC	2 cut(s)	110, 262
LpnPI	CCDG	7 cut(s)	64, 198, 312, 410, 601, 615, 642
LweI	GCATC	2 cut(s)	178, 355
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	654
MalI	GATC	6 cut(s)	69, 183, 255, 303, 578, 662
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
MboII	GAAGA	5 cut(s)	319, 388, 562, 596, 601
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	8 cut(s)	47, 114, 126, 169, 194, 204, 519, 648
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	3 cut(s)	76, 228, 512
MnlI	CCTC	6 cut(s)	35, 38, 110, 337, 421, 649
MseI	TTAA	2 cut(s)	168, 177
MspR9I	CCNGG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	172, 219
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
NlaIII	CATG	5 cut(s)	162, 402, 458, 575, 667
NspV	TTCGAA	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	200, 479, 568
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	168, 177
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	6 cut(s)	67, 181, 253, 301, 576, 660
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	630
SetI	ASST	7 cut(s)	27, 102, 168, 324, 432, 620, 634
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	178, 355
SfuI	TTCGAA	1 cut(s)	198
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	8 cut(s)	47, 114, 126, 169, 194, 204, 519, 648
SsiI	CCGC	3 cut(s)	265, 354, 509
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	2 cut(s)	93, 398
TaaI	ACNGT	2 cut(s)	526, 678
TaqI	TCGA	4 cut(s)	66, 198, 304, 607
TasI	AATT	8 cut(s)	47, 114, 126, 169, 194, 204, 519, 648
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	3 cut(s)	200, 479, 568
Tru1I	TTAA	2 cut(s)	168, 177
Tru9I	TTAA	2 cut(s)	168, 177
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	3 cut(s)	47, 194, 648
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.