FvH4_6g30050

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000363
Physical Location & Seq
Forward (+)
23202322 .. 23202885
564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30050.t1

Sequence Viewer

Length: 357 bp
ATGTCTTCAAAGAATGATGTGAATAGAAGGGTTGAGGTTGCTGAGCAGCAGCATCACTTCAAGCGGTTAGGCCAAGTACAGAACTGGATTTTGAGGGTGGAAACTGTACTCAAGTCAATCAAGTTATCAAGGATGAGCAACTTGTTTGAAGAAAAAGTTGGAAAGGAAACTCTTTCTGTTGATCCAGATATCCCCGAACTGGCTGAGATTGTGGCAAAAGAGTGTGGCGGTTTGCCACTTGCATTAGCTACAGTTGGTCGGGCCATGGCTTGCAAGAAGACACCTCAAGAATGGAATCTTGCAATTCAAATACTGAAAAAATCCCACCTCAGAGTTCTCAGATTTTGTCATATCTAG

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

9.51

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 228
AclWI GGATC 1 cut(s) 176
AfaI GTAC 2 cut(s) 78, 108
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 4 cut(s) 9, 61, 149, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 70, 261
ApeKI GCWGC 2 cut(s) 46, 49
AspS9I GGNCC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 58, 61
BfaI CTAG 1 cut(s) 355
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 47, 50
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 2 cut(s) 48, 51
BmgT120I GGNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 2 cut(s) 95, 270
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 89, 204
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 4 cut(s) 33, 195, 343, 352
BseNI ACTGG 2 cut(s) 89, 204
BseXI GCAGC 2 cut(s) 58, 61
BshFI GGCC 2 cut(s) 72, 263
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 2 cut(s) 72, 263
Bsp143I GATC 1 cut(s) 181
Bsp1720I GCTNAGC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 2 cut(s) 64, 228
BspANI GGCC 2 cut(s) 72, 263
BspCNI CTCAG 4 cut(s) 34, 196, 342, 351
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 89, 204
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 106, 253
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 4 cut(s) 42, 204, 329, 338
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 58, 61
BstV2I GAAGAC 1 cut(s) 284
BsuRI GGCC 2 cut(s) 72, 263
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 77, 107
CviAII CATG 1 cut(s) 265
CviJI RGCY 5 cut(s) 72, 203, 248, 263, 269
CviKI_1 RGCY 5 cut(s) 72, 203, 248, 263, 269
CviQI GTAC 2 cut(s) 77, 107
DdeI CTNAG 4 cut(s) 42, 204, 329, 338
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 264
Eco32I GATATC 1 cut(s) 190
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 268
FaiI YATR 2 cut(s) 266, 351
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 47, 50
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 47, 50
FspBI CTAG 1 cut(s) 355
GluI GCNGC 2 cut(s) 47, 50
HaeIII GGCC 2 cut(s) 72, 263
Hin1II CATG 1 cut(s) 268
HinfI GANTC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 332, 341
Hpy188III TCNNGA 2 cut(s) 185, 287
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 106, 253
HpyCH4V TGCA 3 cut(s) 242, 273, 302
HpyF3I CTNAG 4 cut(s) 42, 204, 329, 338
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 70, 185, 198
Lsp1109I GCAGC 2 cut(s) 58, 61
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 355
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 161, 289
MluCI AATT 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 28, 87, 294, 338
NcoI CCATGG 1 cut(s) 264
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 268
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 48, 51
PspPI GGNCC 1 cut(s) 261
RsaI GTAC 2 cut(s) 78, 108
RsaNI GTAC 2 cut(s) 77, 107
SatI GCNGC 2 cut(s) 47, 50
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 261
SetI ASST 4 cut(s) 39, 250, 286, 330
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 110, 285
SmoI CTYRAG 2 cut(s) 110, 285
Sse9I AATT 1 cut(s) 303
SsiI CCGC 2 cut(s) 64, 228
SspMI CTAG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 106, 253
TasI AATT 1 cut(s) 303
TatI WGTACW 2 cut(s) 76, 106
TfiI GAWTC 1 cut(s) 295
TseI GCWGC 2 cut(s) 46, 49
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.